Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000852-TA|BGIBMGA000852-PA|undefined
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   5.1  
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    27   5.1  
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po...    26   6.8  
SPCC417.02 |dad5|hsk3, hos3|DASH complex subunit Dad5|Schizosacc...    26   8.9  

>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 127 SVSKDLMGGMHQLMPNTSHPNQLHSTMPMSSIQGGMNVTNVGNMIVTNSNMT 178
           ++ K+ + G+  L  N      + S   + S+QG + +T+ G     +SNMT
Sbjct: 484 AICKETLEGLQHLHENGIVHRDIKSDNILLSLQGDIKLTDFGFCAQIDSNMT 535


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 123 PPNVSVSKDLMGGMHQLMPNT-SHPNQLHSTMPMSSIQGGMNVTNVGNMIVTNSNMTGAG 181
           P  +  ++  M  M+     + S  N  +ST PMS +    + T++  M ++NS  + +G
Sbjct: 44  PLQILTARAAMAAMNMSNDTSMSGMNMTNSTTPMSGMNMTNSTTSMSGMNMSNSTTSMSG 103

Query: 182 M 182
           M
Sbjct: 104 M 104


>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 213

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 167 VGNMIVTNSNMTGAGMLGSGIINNVNKQLPTLM 199
           +G+ +V   N+T    L + I NNVNK L  L+
Sbjct: 148 IGDELVHVQNVTSLSELPTFISNNVNKTLDVLL 180


>SPCC417.02 |dad5|hsk3, hos3|DASH complex subunit
           Dad5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 94

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 173 TNSNMTGAGMLGSGIINNVNKQLPTLMGNSHHGTHHPHAQAIQ 215
           T+S+      + S  +N +  QL  L  N  H  +H H  AIQ
Sbjct: 12  TSSSSPSPSQMKSFQMNRLVDQLSKLQSNMSHLENHLHVTAIQ 54


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.132    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,315,331
Number of Sequences: 5004
Number of extensions: 49007
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 4
length of query: 342
length of database: 2,362,478
effective HSP length: 73
effective length of query: 269
effective length of database: 1,997,186
effective search space: 537243034
effective search space used: 537243034
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)