Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000852-TA|BGIBMGA000852-PA|undefined
(342 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19090.2 68418.m02270 heavy-metal-associated domain-containin... 33 0.28
At5g19090.1 68418.m02269 heavy-metal-associated domain-containin... 33 0.28
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 31 1.5
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 31 1.5
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 31 1.5
At1g76500.1 68414.m08901 DNA-binding family protein contains Pfa... 31 1.5
At1g03530.1 68414.m00334 expressed protein similar to hypothetic... 30 1.9
At5g25610.1 68418.m03047 dehydration-responsive protein (RD22) i... 30 2.6
At3g59750.1 68416.m06666 receptor lectin kinase, putative simila... 30 2.6
At1g15780.1 68414.m01893 expressed protein 30 2.6
At5g51300.2 68418.m06360 splicing factor-related contains simila... 29 5.9
At5g51300.1 68418.m06359 splicing factor-related contains simila... 29 5.9
At5g05410.1 68418.m00583 DRE-binding protein (DREB2A) identical ... 29 5.9
At5g27690.1 68418.m03321 heavy-metal-associated domain-containin... 28 7.9
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 28 7.9
At1g29820.1 68414.m03645 expressed protein 28 7.9
>At5g19090.2 68418.m02270 heavy-metal-associated domain-containing
protein contains Pfam heavy-metal-associated domain
PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
isoform contains a non-consensus TG-acceptor splice site
at intron 3
Length = 465
Score = 33.1 bits (72), Expect = 0.28
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 12/111 (10%)
Query: 40 LPDELMGGPWGEQPG-VPGPKPPAQGLGPGQMAPQQQLNGDDPAAAMHRQINNHLLQGNK 98
LP +L GGP G PG VP K P P Q A + + DD + ++ + +
Sbjct: 178 LPPQLKGGP-GPGPGSVPMNKNPQMPNNPNQKAVKFNVPDDDDEEDFSDEFDDEFDEDDD 236
Query: 99 SGLVGHXXXXXXXXXXXXXXXXQSPPNVSVSKDLMGGMHQLMPNTSHPNQL 149
PP + K +MGG + +MPN PN +
Sbjct: 237 E----------FDDDLEDDEFDDHPPPPNKMKPMMGGGNMIMPNNMMPNMM 277
>At5g19090.1 68418.m02269 heavy-metal-associated domain-containing
protein contains Pfam heavy-metal-associated domain
PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
isoform contains a non-consensus TG-acceptor splice site
at intron 3
Length = 587
Score = 33.1 bits (72), Expect = 0.28
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 12/111 (10%)
Query: 40 LPDELMGGPWGEQPG-VPGPKPPAQGLGPGQMAPQQQLNGDDPAAAMHRQINNHLLQGNK 98
LP +L GGP G PG VP K P P Q A + + DD + ++ + +
Sbjct: 178 LPPQLKGGP-GPGPGSVPMNKNPQMPNNPNQKAVKFNVPDDDDEEDFSDEFDDEFDEDDD 236
Query: 99 SGLVGHXXXXXXXXXXXXXXXXQSPPNVSVSKDLMGGMHQLMPNTSHPNQL 149
PP + K +MGG + +MPN PN +
Sbjct: 237 E----------FDDDLEDDEFDDHPPPPNKMKPMMGGGNMIMPNNMMPNMM 277
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 30.7 bits (66), Expect = 1.5
Identities = 28/103 (27%), Positives = 35/103 (33%), Gaps = 7/103 (6%)
Query: 5 PPNKRPKMIRDPFQGPSDSTADGFSNLDMFDLEKDLPDELMGGPWGEQP---GVPGPKPP 61
PP+ +P P GP F F G P G +P G P P P
Sbjct: 118 PPSNQPPFGGRPSTGPLVGGGSSFPQPGGFPASGPPGGVPSGPPSGARPIGFGSPPPMGP 177
Query: 62 AQGLGPGQMAPQQQLNGDDPAAAMHRQINNHLLQG-NKSGLVG 103
+ P P L+ P + MH HL G SG+ G
Sbjct: 178 GMSMPPPSGMPGGPLSNGPPPSGMH---GGHLSNGPPPSGMPG 217
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 128 VSKDLMGGMHQLMPNTSHPNQLHSTMPMSSIQGGMNVTN 166
V+ D M G+ ++P +HP+ H P+S+ QG +N +N
Sbjct: 408 VNSDNMPGLASILP--AHPSSFHGFSPVSNDQGLLNHSN 444
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 128 VSKDLMGGMHQLMPNTSHPNQLHSTMPMSSIQGGMNVTN 166
V+ D M G+ ++P +HP+ H P+S+ QG +N +N
Sbjct: 421 VNSDNMPGLASILP--AHPSSFHGFSPVSNDQGLLNHSN 457
>At1g76500.1 68414.m08901 DNA-binding family protein contains Pfam
domain, PF02178: AT hook motif
Length = 302
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 19 GPSDSTADGFSN--LDMFDLEKDLPDELMGGPWGEQPGVPGPKPPAQGLGPGQMAPQQQL 76
GP A FSN + LE + + GG GE G G PPA P A Q QL
Sbjct: 211 GPVILMAASFSNATFERLPLEDEGGEGGEGGEVGEGGGGEGGPPPATSSSPPSGAGQGQL 270
Query: 77 NGD 79
G+
Sbjct: 271 RGN 273
>At1g03530.1 68414.m00334 expressed protein similar to hypothetical
protein GB:O14360
Length = 797
Score = 30.3 bits (65), Expect = 1.9
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 7/99 (7%)
Query: 7 NKRPKMIRDPFQGPSDSTADGFSNLDMFDLEKDLPDELMGGPWGEQPGVP----GPKPPA 62
NK+ K RDP + S + + N L + D MGGP + G P +P +
Sbjct: 520 NKKKKN-RDPGRPTSSYSGEWTKNQGSSSLSSNRSDPQMGGPRPQMDGFPPNNAAWRPQS 578
Query: 63 QGLGPGQMAP-QQQLNGDDPAAAMHRQINNHLLQGNKSG 100
P Q+ P Q+ P AM Q N + Q +G
Sbjct: 579 NQQNPYQLPPIPNQMGMQIPFMAMQNQ-NQMMFQPQFNG 616
>At5g25610.1 68418.m03047 dehydration-responsive protein (RD22)
identical to SP|Q08298 Dehydration-responsive protein
RD22 precursor {Arabidopsis thaliana}
Length = 392
Score = 29.9 bits (64), Expect = 2.6
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 140 MPNTSHPNQLHSTMPMSSIQGGMNVTNVGNMIVTNSNMTGAGMLGSGIINNVNK---QLP 196
+PNT PN LH+ + VG V N N T G GSG NV K ++
Sbjct: 33 LPNTPIPNSLHNLLTFDFTDEKSTNVQVGKGGV-NVN-THKGKTGSGTAVNVGKGGVRVD 90
Query: 197 TLMGNSHHGTH 207
T G GTH
Sbjct: 91 TGKGKPGGGTH 101
>At3g59750.1 68416.m06666 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 626
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 124 PNVSVSKDLMGGMHQLMPNTSHPNQLHST--MPMSSIQG--GMNVTNVGNMIVTNS 175
PN+S ++ G+ QL N + + MP +SI+ G+N+ +VG M +TNS
Sbjct: 565 PNMSAVMQILNGVSQLPDNLLDVVRAENLRGMPETSIEVLLGLNLYSVGTMTLTNS 620
>At1g15780.1 68414.m01893 expressed protein
Length = 1335
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/89 (22%), Positives = 33/89 (37%)
Query: 10 PKMIRDPFQGPSDSTADGFSNLDMFDLEKDLPDELMGGPWGEQPGVPGPKPPAQGLGPGQ 69
P+ P Q P T S+ + + + GP +Q + + PG
Sbjct: 695 PQSQMQPMQQPQSQTVQDQSHDNQTNPQMQSMSMQGAGPRAQQSSMTNMQSNVLSSRPGV 754
Query: 70 MAPQQQLNGDDPAAAMHRQINNHLLQGNK 98
APQQ + PA+++ N L G +
Sbjct: 755 SAPQQNIPSSIPASSLESGQGNTLNNGQQ 783
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 53 PGVPGPKPPAQGLGPGQMAP 72
PG P P+PP QG P P
Sbjct: 566 PGPPAPQPPTQGYPPSNQPP 585
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 53 PGVPGPKPPAQGLGPGQMAP 72
PG P P+PP QG P P
Sbjct: 566 PGPPAPQPPTQGYPPSNQPP 585
>At5g05410.1 68418.m00583 DRE-binding protein (DREB2A) identical to
DREB2A GI:3738230 from [Arabidopsis thaliana] ;
supported by cDNA:gi_3738229_dbj_AB007790.1_AB007790
Length = 335
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 20 PSDSTADGFSNLDMFDLEKDLPDELMGGPWGEQPGVPGPKPPAQGLGPGQMAPQQQLNGD 79
P+D + DMFD+++ L D + G G+ + P + G P+ Q +G
Sbjct: 245 PNDVDQSHLDSSDMFDVDELLRD--LNGD-DVFAGLNQDRYPGNSVANGSYRPESQQSGF 301
Query: 80 DPAAAMHRQINNHLLQG 96
DP +++ I L+G
Sbjct: 302 DPLQSLNYGIPPFQLEG 318
>At5g27690.1 68418.m03321 heavy-metal-associated domain-containing
protein very low similarity to copper homeostasis factor
from Arabidopsis thaliana [gi:3168840]; contains Pfam
heavy metal associated domain PF00403
Length = 352
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 231 PNIRAPLQHHPR-MQAPGGGGHPLAPYH 257
P + +P +HHP+ M PG G P + YH
Sbjct: 242 PTVHSPPRHHPQQMYGPGPGLPPPSFYH 269
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/78 (21%), Positives = 34/78 (43%)
Query: 126 VSVSKDLMGGMHQLMPNTSHPNQLHSTMPMSSIQGGMNVTNVGNMIVTNSNMTGAGMLGS 185
VS++ +L+ + ++P TS P S PMS ++ + N + + A G
Sbjct: 792 VSLTPELLATLASILPATSQPAAPESHQPMSGPSTVVSTAHQSNGLYNGEAPSQAWKRGP 851
Query: 186 GIINNVNKQLPTLMGNSH 203
+++ + Q GN +
Sbjct: 852 QTVHDASNQSFQQYGNQY 869
>At1g29820.1 68414.m03645 expressed protein
Length = 540
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 30 NLDMFDLEKDLPDELMGGPWGEQPGVP 56
NL++ D E+D+P + P+ E+PG P
Sbjct: 139 NLELIDDEEDVPVTDLAAPYWERPGGP 165
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.132 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,277,056
Number of Sequences: 28952
Number of extensions: 292276
Number of successful extensions: 629
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 30
length of query: 342
length of database: 12,070,560
effective HSP length: 82
effective length of query: 260
effective length of database: 9,696,496
effective search space: 2521088960
effective search space used: 2521088960
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)
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