Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000852-TA|BGIBMGA000852-PA|undefined
(342 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0213 + 6480521-6480644,6482347-6482499,6482582-6482980,648... 33 0.44
07_03_0263 - 15951011-15951818,15952009-15952526,15952949-159531... 32 0.58
06_01_0738 + 5458182-5458374,5460512-5461766,5461861-5462053,546... 31 1.0
06_03_0559 + 22148773-22149210,22149478-22149684,22150065-221504... 31 1.3
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527... 31 1.8
02_05_0543 + 29872168-29872767,29873089-29873115 31 1.8
09_04_0535 + 18397051-18397644 30 2.3
07_03_1136 + 24218601-24218734,24218769-24219906 30 3.1
03_02_1025 + 13289146-13289586,13291882-13292087,13292174-132923... 29 4.1
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250... 29 5.4
06_03_1310 + 29238644-29240260 29 7.1
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365... 29 7.1
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 29 7.1
01_02_0037 + 10476208-10476876 29 7.1
11_01_0508 + 3933308-3933856 28 9.4
04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544... 28 9.4
>03_02_0213 +
6480521-6480644,6482347-6482499,6482582-6482980,
6483158-6483234,6483990-6485312
Length = 691
Score = 32.7 bits (71), Expect = 0.44
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 134 GGMHQLMPNTSHPNQLHSTMPMSSIQGGMNVTNVGNMIVTNSNMTGAGMLGSGIINNVNK 193
G + + P+ H L ++ P SS+ GG+++ N + + G G L SG++N
Sbjct: 459 GFLAAMPPSMKHEPVLATSQPSSSLLGGIDLVNQASTSQPLISAHGGGNL-SGLVNRNPN 517
Query: 194 QLPTLMGNSHHGTHHPH 210
+P+ ++ H ++P+
Sbjct: 518 VVPSQGISTFHTPNNPY 534
>07_03_0263 -
15951011-15951818,15952009-15952526,15952949-15953197,
15953270-15953857
Length = 720
Score = 32.3 bits (70), Expect = 0.58
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 25 ADGFSNLDMFD--LEKDLPDELMGGPWGEQPGVPGPKPPAQGLGPGQMAPQ--QQLNGDD 80
A+GF L M+ L+ D DEL+ G G +P +PP G+G G+ P +QLN +
Sbjct: 40 AEGFPGLGMYGAFLQGD-DDELLTGR-GRGSSLPPYRPPRAGVGDGRATPNLTRQLNFGN 97
Query: 81 PAAA 84
++A
Sbjct: 98 SSSA 101
>06_01_0738 +
5458182-5458374,5460512-5461766,5461861-5462053,
5462151-5462344,5462443-5462601,5462683-5463025
Length = 778
Score = 31.5 bits (68), Expect = 1.0
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 144 SHPNQLHSTMPMSSIQGGM---NVTNVGNMIVTNSNMTGAGMLGSGIINNVNKQLPTL-M 199
S NQ ST ++ GG N T+V + N N T AG+ G +KQ T
Sbjct: 316 STSNQTASTAMVAKKAGGSPSKNQTSVASTNSKNQNQTSAGVASGGSSGTTSKQEETTSQ 375
Query: 200 GNSHHGTHHPHAQAIQN 216
G+ HP AQAI +
Sbjct: 376 GSVGSSKDHP-AQAINS 391
>06_03_0559 +
22148773-22149210,22149478-22149684,22150065-22150471,
22150655-22151472,22151564-22151674,22151846-22152015
Length = 716
Score = 31.1 bits (67), Expect = 1.3
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 25 ADGFSNLDMFD--LEKDLPDELMGGPWGEQPGVPGPKPPAQGLGPGQMAP----QQQLNG 78
A+GF L M+ L+ D DEL+ G G +P +PP G G G+ P + L+G
Sbjct: 40 AEGFPGLGMYGAFLQGD-DDELLTGH-GRGSSLPPYRPPRAGAGDGRATPNLSRRLNLDG 97
Query: 79 DDPAAA 84
P A
Sbjct: 98 SSPTGA 103
>04_03_0747 -
19251617-19251781,19252377-19252502,19252606-19252716,
19252931-19253679,19254034-19254167,19254595-19254740,
19255166-19255336,19255977-19256828
Length = 817
Score = 30.7 bits (66), Expect = 1.8
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 159 QGGMNVTNVGNMIV--TNSNMTGAGMLGSGIINNVNKQLPTLMGNSHHGT 206
QGG+ +++ + TN+N T G+ + VN PT +GN+ H +
Sbjct: 392 QGGLPLSSRATLAAWPTNANATNDAEQGASVPRTVNTPHPTRLGNASHAS 441
>02_05_0543 + 29872168-29872767,29873089-29873115
Length = 208
Score = 30.7 bits (66), Expect = 1.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 42 DELMGGPWGEQPGVPGPKPP 61
D+++ G WGE P P P PP
Sbjct: 168 DQVLEGIWGESPAAPPPPPP 187
>09_04_0535 + 18397051-18397644
Length = 197
Score = 30.3 bits (65), Expect = 2.3
Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 41 PDELMGGPWGEQPGVPGPKPPAQGLGPGQMAPQQQLNGDDPAAAMHRQ 88
P +MG P G PG P PPA G A QQL PAAA +Q
Sbjct: 9 PPPVMGAPVGFPPGAYPPPPPA---GAAAAAYAQQLYA-PPAAAAAQQ 52
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.9 bits (64), Expect = 3.1
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 46 GGPWGEQPGVPG---PKPPAQGLGPGQMAPQQQLNGDDPAAAMHR 87
GGP PG G +PPA G G G AP++ L G A+ R
Sbjct: 115 GGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALAR 159
>03_02_1025 +
13289146-13289586,13291882-13292087,13292174-13292323,
13292412-13292545,13292843-13292949,13293031-13293137,
13293581-13293686,13294098-13294217,13294318-13294474,
13295163-13295254,13295338-13295582,13295668-13296268,
13296362-13296457,13296541-13296794,13297622-13297715,
13299138-13299188
Length = 986
Score = 29.5 bits (63), Expect = 4.1
Identities = 10/13 (76%), Positives = 11/13 (84%)
Query: 247 GGGGHPLAPYHPT 259
GGGG P+APY PT
Sbjct: 28 GGGGEPMAPYRPT 40
>06_03_1208 -
28422941-28423139,28423854-28424434,28424705-28425078,
28425235-28425339,28425902-28425970,28426084-28426156,
28426395-28426478,28426616-28426648,28426731-28426790,
28427535-28427627,28427851-28427970,28428804-28428886,
28428887-28429007,28429114-28429164,28429245-28429333,
28429429-28429561,28430220-28430354,28430581-28430952,
28431679-28431796,28431883-28431998,28432131-28432442
Length = 1106
Score = 29.1 bits (62), Expect = 5.4
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 54 GVPGPKPPAQGLGPGQMAPQQQLNGDDPAAAMHR 87
G G PPA PGQ P+ GDDPA+ +R
Sbjct: 7 GGRGAPPPATAASPGQKRPR----GDDPASPSNR 36
>06_03_1310 + 29238644-29240260
Length = 538
Score = 28.7 bits (61), Expect = 7.1
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 17 FQGPSDSTADGFSNLDMFDLEKDL-------PDELMGGPWGEQPGVPGPKPPAQ 63
F+GP +T +L F E + P G W PG P +PPAQ
Sbjct: 293 FEGPVPATICSLQSLKNFTYEDNFFSSRPGCPAATADGRWNCIPGAPAQRPPAQ 346
>05_01_0462 -
3658153-3658290,3658394-3658540,3658622-3658720,
3658802-3659253,3659597-3660280,3662072-3662180
Length = 542
Score = 28.7 bits (61), Expect = 7.1
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 234 RAPLQHHPRMQAPGGGGHPLA----PYHP 258
RAPL HPR+ PG G +A PY+P
Sbjct: 252 RAPLSVHPRILPPGPDGSSIAFRERPYYP 280
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 28.7 bits (61), Expect = 7.1
Identities = 34/125 (27%), Positives = 48/125 (38%), Gaps = 12/125 (9%)
Query: 123 PPNVSVSKDLMGGMHQLMPNTSHPNQLHSTMPMSSIQG-GMNVTNVGNMIVTNSNMTGAG 181
P V S L G HQ P+ QL T+ SS G+N T G + ++ +
Sbjct: 275 PTIVETSIFLEVGNHQ--PSVPRMKQLAQTITNSSSGNLGLNHTVFGRV----KQISLSS 328
Query: 182 MLGSGIINNVNKQLPTLMGNSHHGTHHPHAQAIQNXXXXXXXXXXXMQAPNIRAPLQHHP 241
L + + + P+ HHG HH H + QAP + P+ H P
Sbjct: 329 YLRHSLHSGGGSEAPSPAPMHHHGHHHHHH---HHHGHEDSRHSAPAQAP-VHYPV-HEP 383
Query: 242 RMQAP 246
R AP
Sbjct: 384 RYGAP 388
>01_02_0037 + 10476208-10476876
Length = 222
Score = 28.7 bits (61), Expect = 7.1
Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 5/86 (5%)
Query: 172 VTNSNMTGAGMLGSGIINNVNKQLPTLMGNSHHGTHHPHAQAIQNXXXXXXXXXXXMQAP 231
+ N+ A ML SG + + L+G+ HH HHP A Q+ AP
Sbjct: 1 MANTTSAAAAMLLSGPAASRDGAAAALLGHHHH--HHPAAMFHQSFPYASTMATLSASAP 58
Query: 232 NIRAPLQHHPRMQAPGGGGHPLAPYH 257
P Q P GG + H
Sbjct: 59 ---FPTITLDLTQTPAGGAGAASLLH 81
>11_01_0508 + 3933308-3933856
Length = 182
Score = 28.3 bits (60), Expect = 9.4
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 153 MPMSSIQGGMNVTNVGNMIVTNSNMTGAGM--LGSGIINNVNKQLPTLMGNSHHGTHHPH 210
M +SS Q + N+++T + G+ + LGS I+++ ++P L G H +
Sbjct: 98 MYVSSDQARIGFLQAMNIVLTAGSYNGSVVIVLGSNHISDIIHEMPILGGTGHFRFARGY 157
Query: 211 AQA 213
AQA
Sbjct: 158 AQA 160
>04_04_0137 -
23053148-23053798,23053911-23054146,23054268-23054458,
23054587-23056010
Length = 833
Score = 28.3 bits (60), Expect = 9.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 53 PGVPGPKPPAQGLGPGQMAPQQQLNG 78
P VP P PP P +AP+QQ +G
Sbjct: 392 PAVPPPPPPTPPPPPPLLAPKQQSSG 417
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.132 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,907,469
Number of Sequences: 37544
Number of extensions: 433925
Number of successful extensions: 1109
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1101
Number of HSP's gapped (non-prelim): 18
length of query: 342
length of database: 14,793,348
effective HSP length: 83
effective length of query: 259
effective length of database: 11,677,196
effective search space: 3024393764
effective search space used: 3024393764
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)
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