Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000852-TA|BGIBMGA000852-PA|undefined
(342 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.063
SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.59
SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.78
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0) 32 0.78
SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31) 31 1.8
SB_51279| Best HMM Match : Filament (HMM E-Value=0.092) 30 2.4
SB_57424| Best HMM Match : Endonuclease_1 (HMM E-Value=6.1e-20) 29 4.1
SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_35402| Best HMM Match : Collagen (HMM E-Value=0.39) 29 7.2
SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38) 28 9.6
SB_38134| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.99) 28 9.6
SB_15137| Best HMM Match : SRCR (HMM E-Value=4.9e-28) 28 9.6
>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 35.5 bits (78), Expect = 0.063
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 7/124 (5%)
Query: 12 MIRDPFQGPSDSTADGFSNLDMFDLEKDLPDELMGGPWGEQPGVPGPKPPAQGLGPGQMA 71
++++ GPSD G + F K LPD + P P P+PPA+G G +
Sbjct: 782 VMKNVVHGPSDPEKAGKVIKEFFPEAKILPDGTVKTP------SPSPQPPAEGPGGSLLN 835
Query: 72 PQQQLNGDDPAAAMHRQINNHLLQGNKSGLVGHXXXXXXXXXXXXXXXXQSPPNVSVSKD 131
+ + G PA + + N + G +G V ++ NV+ D
Sbjct: 836 KRCIIRGRPPAEELVEEKFNDPV-GLGTGAVSDEAFSASSVLDEGHSAARARLNVTPDGD 894
Query: 132 LMGG 135
L GG
Sbjct: 895 LKGG 898
>SB_17603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 826
Score = 32.3 bits (70), Expect = 0.59
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 19 GPSDSTADGFSNLDMFDLEKDLPDELMGGPWGEQPGVPGPKPPAQ--GLGPGQMAPQQ 74
G ++T G L D + D+ M GP E P P KPPAQ LG Q P Q
Sbjct: 528 GAPNTTPPGQQQLPASDENFNSGDKRMPGPQQEHPLYPSQKPPAQPNDLGAYQNYPGQ 585
>SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1186
Score = 31.9 bits (69), Expect = 0.78
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 41 PDELMGGPWGEQPGVPGPKPPAQGLGPGQMAPQQQLNGDDPAAAMHR 87
PD +GGP PG+ GP P G PG P G P A +R
Sbjct: 522 PDPGLGGP---NPGLGGPNPGLGGPNPG--TPDSGFGGSPPKLAAYR 563
Score = 29.9 bits (64), Expect = 3.1
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 41 PDELMGGPWGEQPGVPGPKPPAQGLGPGQMAPQQQLNGDDP 81
P+ +GGP PG GP P G PG P Q DP
Sbjct: 487 PNPGLGGP---NPGFGGPNPGLGGPNPGLGRPNQGFGRPDP 524
>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
Length = 2276
Score = 31.9 bits (69), Expect = 0.78
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 5/46 (10%)
Query: 1 MADEPPNKRPKMIRDPFQGPSDSTADGFSNLDMFDLEKDLPDELMG 46
+ D PPNKR K+ P P+++ AD LD DLE++LP+ELMG
Sbjct: 74 LVDGPPNKRQKL-GTP-DTPTEN-ADIGKFLD--DLEQNLPEELMG 114
Score = 29.1 bits (62), Expect = 5.5
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 41 PDELMGGPWGEQPGVPGPKPPAQGLGPGQMAPQQQLNGDDPAAAMH---RQINNHLLQGN 97
P + G G Q G+ G + QG+ G P QQ MH +Q+ ++ QG
Sbjct: 1941 PQSMQQGMQGMQQGMQGIQQGMQGMQQGMQHPMQQGMQPGMQMGMHQGMQQMQPNMQQGM 2000
Query: 98 KSGL 101
+ G+
Sbjct: 2001 QQGM 2004
>SB_8802| Best HMM Match : WW (HMM E-Value=3.2e-31)
Length = 662
Score = 30.7 bits (66), Expect = 1.8
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 36 LEKDLPDELMGGPWGEQPGVPGPKPPAQGLGPGQMAPQQQLNG 78
L++ LP + P +Q P P Q GPGQM P QQ G
Sbjct: 238 LQQQLPGQQQQNPGQQQSNQQQP-PQQQQHGPGQMQPNQQHPG 279
>SB_51279| Best HMM Match : Filament (HMM E-Value=0.092)
Length = 778
Score = 30.3 bits (65), Expect = 2.4
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 51 EQPGVPGPKPPAQGLGPGQMAPQQQLNGDDPAAA---MHRQINNHLLQGNK 98
++P + +PPA +GP AP LN + M+R++ N +Q ++
Sbjct: 527 KKPSINSYRPPANSVGPATPAPTPWLNKSKSTTSVPRMYREMTNSSIQASR 577
>SB_57424| Best HMM Match : Endonuclease_1 (HMM E-Value=6.1e-20)
Length = 360
Score = 29.5 bits (63), Expect = 4.1
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 127 SVSKDLMGGMHQLMPNTSHPNQLHSTMPMSSIQGGMNVTNVGNMIVTNSNMTGAGMLGSG 186
S + + G H L+P N S P NVG+ +V+ S ++ GS
Sbjct: 108 SQNNPMRGDAHHLLPTDGRVNGFRSNFPFG---------NVGSSLVSQSGISNPTSNGSK 158
Query: 187 IINNVNKQL 195
+ NN+N L
Sbjct: 159 LGNNINTGL 167
>SB_4337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 29.5 bits (63), Expect = 4.1
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 8 KRPKMIRDPFQGPSDSTADGFSNLDMFDLEKDLPDELMG-GPWGEQPG----------VP 56
K K+I + + D + D D++ + ++G GP G+QPG +P
Sbjct: 182 KDSKLIDEVYDDDDDDNDNDDDVNDHDDVKVNFNLHIVGYGPPGQQPGSPGQHQGYGTLP 241
Query: 57 GPKPPAQGLGPGQMAPQQQLNGDDP 81
GP P QG GP P QQ G P
Sbjct: 242 GPPPGQQGYGP---PPGQQGYGAPP 263
>SB_35402| Best HMM Match : Collagen (HMM E-Value=0.39)
Length = 657
Score = 28.7 bits (61), Expect = 7.2
Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 2/118 (1%)
Query: 146 PNQLHSTMPMSSIQGGMNVTNVGNMIVTNSNMTGAGMLGSGIINNVNKQLPTLMGNSHHG 205
P+++H GG + T +G+ SNM G+ G G N +Q + G
Sbjct: 176 PDEVHDIATAQVNSGGQSATALGSNSAQVSNMAKGGLAGQGGQMNQMRQGGQMNQMGQGG 235
Query: 206 THHPHAQAIQNXXXXXXXXXXXMQAPNIRAPLQHHPRMQAPGGGGHPLAPYHPTYGQS 263
+ Q M P ++Q P GG+ PY+P YG S
Sbjct: 236 QMNQMGQGGPMNQMGQGGQMNQMGQGGQMNPFGQGGQIQ-PQMGGNQNNPYNP-YGSS 291
>SB_49662| Best HMM Match : Bromodomain (HMM E-Value=9.8e-38)
Length = 1301
Score = 28.3 bits (60), Expect = 9.6
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 41 PDELMGGPWGEQPGVPGPKPPAQGLG----PGQMAPQQQLNGDDPAAAMHRQINNHLLQG 96
P L P G+Q PG PA + PGQ +P + GD AA N+ + G
Sbjct: 744 PPRLQRAPSGDQMQRPGQHLPAGFISRFQNPGQASPPGKPPGDQSEAARTPDSNHSMSPG 803
Query: 97 NKS 99
++
Sbjct: 804 QRT 806
>SB_38134| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.99)
Length = 612
Score = 28.3 bits (60), Expect = 9.6
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 133 MGGMHQLMPNTSHPNQLHSTMPMSSIQGGMNVTNVGNMIVTNSNMTGAGMLGSGIINNVN 192
MGGM+ + +PN TMP + GG + + I GM G N
Sbjct: 105 MGGMNGMGLGGFNPNSGGMTMPQVNSFGGPPMEVMNPSIGLKMLQQMKGMQG-----NNE 159
Query: 193 KQLPTLMGNSHHGTHHPH 210
+Q PT HH HH H
Sbjct: 160 QQEPT--DEQHHKRHHHH 175
>SB_15137| Best HMM Match : SRCR (HMM E-Value=4.9e-28)
Length = 327
Score = 28.3 bits (60), Expect = 9.6
Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 7/110 (6%)
Query: 142 NTSHPNQLHSTMPMS-SIQGGMNVTNVGNMIVTNSNMTGAGMLGSGIINNVNKQLPTLMG 200
N+S N +ST + S + N T+ N +NSN + + S NN
Sbjct: 134 NSSTRNNNNSTSNSNNSTRNNNNSTSNSNNSTSNSNNSTSNSNNSSNNNNSTSNSNNSTS 193
Query: 201 NSHHGTHHPHAQA------IQNXXXXXXXXXXXMQAPNIRAPLQHHPRMQ 244
NS++ T + ++ + I N + AP IR L + R++
Sbjct: 194 NSNNSTRNNNSSSNNNNSTINNKIVATTTTTTTVLAPRIRLSLGSYGRVE 243
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.313 0.132 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,235,712
Number of Sequences: 59808
Number of extensions: 407405
Number of successful extensions: 761
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 741
Number of HSP's gapped (non-prelim): 27
length of query: 342
length of database: 16,821,457
effective HSP length: 83
effective length of query: 259
effective length of database: 11,857,393
effective search space: 3071064787
effective search space used: 3071064787
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)
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