GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000852-TA|BGIBMGA000852-PA|undefined
         (342 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           25   2.3  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    25   3.1  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    25   4.1  
AJ130951-1|CAA10260.1|  189|Anopheles gambiae SG3 protein protein.     25   4.1  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   5.4  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    24   5.4  
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    24   5.4  
AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin b...    24   7.1  

>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 135 GMHQLMPNTSHPNQLHSTMPMSSIQGGMNVTNVG-NMIVTNSNMTG--AGMLGSGIINNV 191
           G+     +   P Q  S  P  S Q    +TN G N ++ +S+  G   G  G G++   
Sbjct: 276 GLRAPPSSQQQPQQQPSQQPQPSSQSNAQLTNGGSNGLLGSSSQAGGSGGSSGGGLLGTD 335

Query: 192 NKQLPT 197
             Q  T
Sbjct: 336 GSQYYT 341


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 15/75 (20%)

Query: 147 NQLH---STMPMSSIQGGMNVTNVGNMIVTNSN--MTG---------AGMLGSGIINNVN 192
           N LH   S  P +++ GG+ +    N +  N+   MTG         AG  GS I NN N
Sbjct: 910 NNLHYHRSASPKATVAGGLPLLP-SNALAGNNGVIMTGVGGGGGGGSAGGAGSTISNNTN 968

Query: 193 KQLPTLMGNSHHGTH 207
               +   +SH GT+
Sbjct: 969 SSSSSGKKSSHSGTN 983


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 46  GGPWGEQ--PGVPGPKPPAQGLGP 67
           G P G +  PG PGPK P    GP
Sbjct: 401 GAPGGGEGRPGAPGPKGPRGYEGP 424


>AJ130951-1|CAA10260.1|  189|Anopheles gambiae SG3 protein
          protein.
          Length = 189

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 46 GGPWGEQPGVPGPKPP 61
          G PW   PG+P  +PP
Sbjct: 80 GRPWWSVPGIPPFRPP 95


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 124 PNVSVSKDLMGGMHQLMPNTSHPNQLHSTMPMSSIQGGMNVTN 166
           P +S  +  +  + +++PN  H   LH  + M S+   +N  N
Sbjct: 382 PVISTEQKELIPIPEIIPNRYHAGWLHDQLDMGSMLHPINAYN 424


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 5   PPNKRPKMIRDPFQGPSDSTADGFSNLDMFDLEKDLPDELM--GGPWGEQPGVPG 57
           PP +   +   P     D   D  S +D +  EKD P+ L     P      +PG
Sbjct: 551 PPQQHSMLRTGPKSLAPDHEGDNDSGVDEYTQEKDRPNALASPASPLKSPSKIPG 605


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 21/89 (23%), Positives = 29/89 (32%), Gaps = 1/89 (1%)

Query: 41  PDELMGGPWGEQPGVPGPKPPAQGLGPGQMAPQQQLNGDDPAAAMHRQINNHLLQGNKSG 100
           P   +G   G  PG  G      G G G +       G +P    H   ++H   G  +G
Sbjct: 79  PQTSLGLSHGPSPGAGGTGSGGSGGGSGGIGSGALHLGQNPNLHHHHHHHHHGNNGGGNG 138

Query: 101 LVGHXXXXXXXXXXXXXXXXQSPPNVSVS 129
             G                  SPP ++VS
Sbjct: 139 GGGGSGGNAHDHLADGLHSIPSPP-ITVS 166


>AJ439060-17|CAD27768.1|  568|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 568

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 228 MQAPNIRAPLQHHPRMQAPGGGGHPLAPYHP 258
           +  P+   P + HP   APGG G  + P  P
Sbjct: 59  LTGPDRPIPGRSHPAEPAPGGNGPFVRPDAP 89


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.313    0.132    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 321,085
Number of Sequences: 2123
Number of extensions: 13575
Number of successful extensions: 40
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 13
length of query: 342
length of database: 516,269
effective HSP length: 64
effective length of query: 278
effective length of database: 380,397
effective search space: 105750366
effective search space used: 105750366
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 48 (23.4 bits)