Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000851-TA|BGIBMGA000851-PA|IPR009080|Aminoacyl-tRNA
synthetase, class 1a, anticodon-binding, IPR001278|Arginyl-tRNA
synthetase, class Ic, IPR008909|DALR anticodon binding
(365 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7606| Best HMM Match : No HMM Matches (HMM E-Value=.) 103 2e-22
SB_43203| Best HMM Match : She9_MDM33 (HMM E-Value=0.27) 31 1.1
SB_6724| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_21567| Best HMM Match : RVT_1 (HMM E-Value=6.4e-18) 30 2.6
SB_16657| Best HMM Match : RVT_1 (HMM E-Value=6.4e-18) 30 2.6
SB_1850| Best HMM Match : fn3 (HMM E-Value=7.5e-22) 30 2.6
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0) 30 3.4
SB_56818| Best HMM Match : RVT_1 (HMM E-Value=3.4e-19) 30 3.4
SB_50945| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.4
SB_40370| Best HMM Match : rve (HMM E-Value=1.3e-37) 30 3.4
SB_29850| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.4
SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.4
SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.4
SB_19010| Best HMM Match : Dimerisation (HMM E-Value=9.8) 30 3.4
SB_15656| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.4
SB_56354| Best HMM Match : RVT_1 (HMM E-Value=3.4e-19) 30 3.4
SB_49147| Best HMM Match : RVT_1 (HMM E-Value=3.4e-19) 30 3.4
SB_43065| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.4
SB_37359| Best HMM Match : RVT_1 (HMM E-Value=3.5e-18) 30 3.4
SB_20649| Best HMM Match : SpoIIP (HMM E-Value=1.3) 30 3.4
SB_9047| Best HMM Match : RVT_1 (HMM E-Value=3.4e-19) 30 3.4
SB_45847| Best HMM Match : DUF1087 (HMM E-Value=6) 29 4.5
SB_27185| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_2152| Best HMM Match : EGF (HMM E-Value=0) 29 4.5
SB_1148| Best HMM Match : TPR_1 (HMM E-Value=0) 29 4.5
SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_21706| Best HMM Match : RVT_1 (HMM E-Value=6.6e-19) 29 6.0
SB_5814| Best HMM Match : PKD (HMM E-Value=6.3e-10) 29 6.0
SB_30296| Best HMM Match : Met_synt_B12 (HMM E-Value=0) 29 7.9
SB_20520| Best HMM Match : Peptidase_A17 (HMM E-Value=6.16571e-44) 29 7.9
>SB_7606| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 637
Score = 103 bits (248), Expect = 2e-22
Identities = 88/351 (25%), Positives = 160/351 (45%), Gaps = 24/351 (6%)
Query: 4 LAETDENVQNEARKYFSDIEQGKISLEN-WKKIRNVTVHELENVYQRLGITFDAFHWESD 62
L ++DE + A + ++QG+ ++ W+ I +V+ E E +Y+RLG+T ES
Sbjct: 290 LFDSDEQFKKRAYERVVQLQQGEPNVRKAWEMICDVSRKEFEKLYERLGVTIIE-RGESF 348
Query: 63 YNGIAIRDLMDYLQ-KHNIISNDETGXXXXXXXXXXXXFLKSDNSTLYLTRDVAALLDRH 121
Y + + L++ L+ K ++ D +KSD Y T D+AAL R
Sbjct: 349 YQPM-MPQLVELLESKGKVLVEDGRKVVFVEGYKVPLTVVKSDGGYTYDTSDLAALRQRV 407
Query: 122 KKYDFDKMLYIVDNSQADHFSSVFEIVKQ---FNKKCTEGCEHIKFGRIKG-----MSTR 173
+ D ++Y+ D Q+ HF VF ++ ++ K T +H+ FG + G TR
Sbjct: 408 EDERGDWIIYVTDAGQSGHFDLVFGAAREAGIYDPKRTR-VDHVGFGVVLGEDRKKFKTR 466
Query: 174 KGNAVFLNDILDEAKQKMYEKQMQSKNTRQSAMNEE---TCDILGTTAVVINDLKQRRQR 230
G V L D++DE ++ +K ++ K Q+ +E + + + DL R
Sbjct: 467 SGETVRLVDLMDEGIRRSVDK-LKEKGRDQALSEDELRAASEAVAYGCIKYADLSHNRVG 525
Query: 231 DYEFNWDRALQSEGDSGIKLQYLHCRLRSLEKNCGVSIPEFCSPALLTEDIIVDVVNE-- 288
DY F++D+ L +G++ + L Y + R+RS+ + G+ A+ +I ++ E
Sbjct: 526 DYVFSFDKMLDDKGNTAVYLLYAYTRIRSIMRTAGMDRASL-EQAIHNTEISLEHPKEWK 584
Query: 289 ----LSKFENVLQRSFEAYEACILVSYLFRLAKCINKMFKEMKVKNVDQST 335
+++F VL R E L +L+ LA + + D+ T
Sbjct: 585 LGKCITRFPQVLSRILEDLLMHPLCEFLYELATTTTEFYDSCYCVEKDRQT 635
>SB_43203| Best HMM Match : She9_MDM33 (HMM E-Value=0.27)
Length = 447
Score = 31.5 bits (68), Expect = 1.1
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 102 KSDNSTLYLTRDVAALLDRHKKY--DFDKMLYIVDNSQADHFSSVFEIVKQFNKKCTEGC 159
+ D L L + +L KK DF++M +N + DHF+S+ +V+ ++K
Sbjct: 147 RDDERYLTLATEEHGILREEKKLKLDFEEM----ENLERDHFASLSAVVRDSHEKERARA 202
Query: 160 EHIKFGRIKGMSTRKGNAVFLNDILDEAKQKMYEKQMQSKNTRQSAMNE 208
E K+ + G + + I++ + K E + K T +S M +
Sbjct: 203 ERTKYWSVLGSVAGASLGIIGSSIVNYIRLK--EIKSSVKGTGESLMEK 249
>SB_6724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 31.1 bits (67), Expect = 1.5
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 20 SDIEQGKISLENWKKIRNVTVHELENVYQRLGITFDAFHWESDYNGIAIRDLMDY 74
+D + ++L N++K R + E N+ + +TFDA + G AIR DY
Sbjct: 617 TDAAETSLALHNYQKARLEYLREQFNIRENDFLTFDAMRHAAQCVGRAIRGKTDY 671
>SB_21567| Best HMM Match : RVT_1 (HMM E-Value=6.4e-18)
Length = 296
Score = 30.3 bits (65), Expect = 2.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 227 RRQRDYEFNWDRALQSEGDSGIKLQYLHC 255
R Q++++ N +RA+Q DSG+ L Y C
Sbjct: 227 RNQKEHDENLERAVQKMQDSGLTLNYEKC 255
>SB_16657| Best HMM Match : RVT_1 (HMM E-Value=6.4e-18)
Length = 1138
Score = 30.3 bits (65), Expect = 2.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 227 RRQRDYEFNWDRALQSEGDSGIKLQYLHC 255
R Q++++ N +RA+Q DSG+ L Y C
Sbjct: 564 RNQKEHDENLERAVQKMQDSGLTLNYEKC 592
>SB_1850| Best HMM Match : fn3 (HMM E-Value=7.5e-22)
Length = 461
Score = 30.3 bits (65), Expect = 2.6
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 303 YEACILVSYLFRLAKCINKMFKEMKVKNVDQSTAEQRLLVFHAARIVVKTSLEILG 358
Y ++VSY R N +KEM + N +QS L +F ++V+ S ++ G
Sbjct: 322 YRNGLIVSYTVRYHISGNSTYKEMMIANCNQSAVIINLRMFTRYILLVRASTKVGG 377
>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2353
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 227 RRQRDYEFNWDRALQSEGDSGIKLQYLHC 255
R Q++++ N +RA+Q DSG+ L Y C
Sbjct: 1924 RNQKEHDENLERAVQKLQDSGLTLNYEKC 1952
>SB_56818| Best HMM Match : RVT_1 (HMM E-Value=3.4e-19)
Length = 796
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 227 RRQRDYEFNWDRALQSEGDSGIKLQYLHC 255
R Q++++ N +RA+Q DSG+ L Y C
Sbjct: 448 RNQKEHDENLERAVQKLQDSGLTLNYEKC 476
>SB_50945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 227 RRQRDYEFNWDRALQSEGDSGIKLQYLHC 255
R Q++++ N +RA+Q DSG+ L Y C
Sbjct: 87 RNQKEHDENLERAVQKLQDSGLTLNYEKC 115
>SB_40370| Best HMM Match : rve (HMM E-Value=1.3e-37)
Length = 1393
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 227 RRQRDYEFNWDRALQSEGDSGIKLQYLHC 255
R Q++++ N +RA+Q DSG+ L Y C
Sbjct: 658 RNQKEHDENLERAVQKLQDSGLTLNYEKC 686
>SB_29850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 227 RRQRDYEFNWDRALQSEGDSGIKLQYLHC 255
R Q++++ N +RA+Q DSG+ L Y C
Sbjct: 32 RNQKEHDENLERAVQKLQDSGLTLNYEKC 60
>SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1360
Score = 29.9 bits (64), Expect = 3.4
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 5 AETDENVQNEARKYFSDIEQGKISLENWKKIRNVTVHELENVYQRLGITFD 55
AET E + N D+ KIS +N+ +T+ + V L +TFD
Sbjct: 1213 AETCELIANFLLSQLQDLNINKISRKNYNNGLRITIEANKRVVNFLDVTFD 1263
>SB_22156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1551
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 227 RRQRDYEFNWDRALQSEGDSGIKLQYLHC 255
R Q++++ N +RA+Q DSG+ L Y C
Sbjct: 848 RNQKEHDENLERAVQKLQDSGLTLNYEKC 876
>SB_19010| Best HMM Match : Dimerisation (HMM E-Value=9.8)
Length = 223
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 227 RRQRDYEFNWDRALQSEGDSGIKLQYLHC 255
R Q++++ N +RA+Q DSG+ L Y C
Sbjct: 32 RNQKEHDENLERAVQKLQDSGLTLNYEKC 60
>SB_15656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1107
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 227 RRQRDYEFNWDRALQSEGDSGIKLQYLHC 255
R Q++++ N +RA+Q DSG+ L Y C
Sbjct: 463 RNQKEHDENLERAVQKLQDSGLTLNYEKC 491
>SB_56354| Best HMM Match : RVT_1 (HMM E-Value=3.4e-19)
Length = 340
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 227 RRQRDYEFNWDRALQSEGDSGIKLQYLHC 255
R Q++++ N +RA+Q DSG+ L Y C
Sbjct: 149 RNQKEHDENLERAVQKLQDSGLTLNYEKC 177
>SB_49147| Best HMM Match : RVT_1 (HMM E-Value=3.4e-19)
Length = 667
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 227 RRQRDYEFNWDRALQSEGDSGIKLQYLHC 255
R Q++++ N +RA+Q DSG+ L Y C
Sbjct: 349 RNQKEHDENLERAVQKLQDSGLTLNYEKC 377
>SB_43065| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 29.9 bits (64), Expect = 3.4
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 183 ILDEAKQKMYEKQMQSKNTRQSAMNEETCDILGTTAVVINDLKQRRQRDYEFNWDRALQS 242
+L + K+ + KQ+Q +TR S E+ LG +ND+KQ R+ YE Q
Sbjct: 332 LLKQDKEYL-NKQVQELSTRSSLAEEQ----LGQVTKQLNDVKQAREELYEKYISTREQY 386
Query: 243 EGDSGIKLQ 251
+ + +KL+
Sbjct: 387 KSEYEVKLK 395
>SB_37359| Best HMM Match : RVT_1 (HMM E-Value=3.5e-18)
Length = 435
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 227 RRQRDYEFNWDRALQSEGDSGIKLQYLHC 255
R Q++++ N +RA+Q DSG+ L Y C
Sbjct: 255 RNQKEHDENLERAVQKLQDSGLTLNYEKC 283
>SB_20649| Best HMM Match : SpoIIP (HMM E-Value=1.3)
Length = 466
Score = 29.9 bits (64), Expect = 3.4
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 5 AETDENVQNEARKYFSDIEQGKISLENWKKIRNVTVHELENVYQRLGITFD 55
AET E + N D+ KIS +N+ +T+ + V L +TFD
Sbjct: 319 AETCELIANFLLSQLQDLNINKISRKNYNNGLRITIEANKRVVNFLDVTFD 369
>SB_9047| Best HMM Match : RVT_1 (HMM E-Value=3.4e-19)
Length = 1116
Score = 29.9 bits (64), Expect = 3.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 227 RRQRDYEFNWDRALQSEGDSGIKLQYLHC 255
R Q++++ N +RA+Q DSG+ L Y C
Sbjct: 571 RNQKEHDENLERAVQKLQDSGLTLNYEKC 599
>SB_45847| Best HMM Match : DUF1087 (HMM E-Value=6)
Length = 48
Score = 29.5 bits (63), Expect = 4.5
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 182 DILDEAKQKMYEKQMQSKNTRQSAMNEETCD 212
D + EA++ YEK+ +++ TR+S M+E+ D
Sbjct: 12 DDVKEARKAQYEKKKRARKTRESDMSEDFDD 42
>SB_27185| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Query: 50 LGITFDAFHWESDYNGIAIRDLMDYLQKHNIISNDETGXXXXXXXXXXXXFLKSDNSTLY 109
+G HW + R Y+++ + N TG ++ S L+
Sbjct: 357 IGHAQSVLHWTGTVSPTLDRHSQSYIRQAQSVLN-WTGTISTTLDMHSQSYIGQAQSVLH 415
Query: 110 LTRDVAALLDRHKKY 124
T V+ LDRH +Y
Sbjct: 416 WTCTVSTRLDRHSQY 430
>SB_2152| Best HMM Match : EGF (HMM E-Value=0)
Length = 1603
Score = 29.5 bits (63), Expect = 4.5
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 182 DILDEAKQKMYEKQMQSKNTRQSAMN--EETCDILGTT---AVVINDLKQRRQRDYEFNW 236
DI+ A Q +Y+K Q K T+++ ++ CD LG V L Q R E W
Sbjct: 847 DIIGIAFQGIYDKAQQLKATKRNVLSVLAGMCDPLGLVNPITVAARILFQILCRTTELTW 906
Query: 237 DRALQSEGDSGIKLQYLHCRLRSLEKNCGVSIP 269
D L E ++ Q+ ++ LE+ + +P
Sbjct: 907 DEELTGE----VRKQW-EAWVKDLERVVSIDLP 934
>SB_1148| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 860
Score = 29.5 bits (63), Expect = 4.5
Identities = 11/40 (27%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 127 DKMLYIVDNSQA-DHFSSVFEIVKQFNKKCTEGCEHIKFG 165
D ++ DN QA +++++ I ++F ++C++ C +I G
Sbjct: 523 DVFYFLGDNGQAMENYNNALCIYEKFGEECSQACVYINIG 562
>SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2011
Score = 29.1 bits (62), Expect = 6.0
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 4 LAETDENVQ-NEARKYFSDIEQGKISLENW-----KKIRNVTVHELENVYQRLG 51
+ E D VQ +EA +Y +DIE+G L NW ++I ++ + Y+R G
Sbjct: 2 ILEHDRLVQLDEAVQYSADIEEGSDLLLNWDFGDQQRITTTNTTKISHTYRRTG 55
>SB_21706| Best HMM Match : RVT_1 (HMM E-Value=6.6e-19)
Length = 323
Score = 29.1 bits (62), Expect = 6.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 227 RRQRDYEFNWDRALQSEGDSGIKLQYLHC 255
R Q++++ N +RA+Q DSG L Y C
Sbjct: 255 RNQKEHDENLERAVQKLQDSGFTLNYEKC 283
>SB_5814| Best HMM Match : PKD (HMM E-Value=6.3e-10)
Length = 460
Score = 29.1 bits (62), Expect = 6.0
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 4 LAETDENVQ-NEARKYFSDIEQGKISLENW-----KKIRNVTVHELENVYQRLG 51
+ E D VQ +EA +Y +DIE+G L NW ++I ++ + Y+R G
Sbjct: 2 ILEHDRLVQLDEAVQYSADIEEGSDLLLNWDFGDQQRITTTNTTKISHTYRRTG 55
>SB_30296| Best HMM Match : Met_synt_B12 (HMM E-Value=0)
Length = 739
Score = 28.7 bits (61), Expect = 7.9
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 115 AALLDRHKKYDF-DKMLYIVDNSQADHFSSVFEIVKQFNKKCTEGC 159
+AL+D+ + DF +++ + + DH+ S+ V++F + T+GC
Sbjct: 345 SALMDKGARDDFVEEVSEEYEEIREDHYDSLKGAVRRFYSRLTKGC 390
>SB_20520| Best HMM Match : Peptidase_A17 (HMM E-Value=6.16571e-44)
Length = 655
Score = 28.7 bits (61), Expect = 7.9
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 182 DILDEAKQKMYEKQMQSKNTRQSAMNE-----ETCDILGTTAVVINDLKQRRQRDYEFNW 236
DI+ A Q +Y+K Q K T+++ ++ +T ++ +V L Q R E W
Sbjct: 354 DIIGIAFQGIYDKAQQLKATKRNVLSVLAGMFDTLGLVSPISVAARILFQTLCRTTELTW 413
Query: 237 DRALQSE 243
D L E
Sbjct: 414 DEELTGE 420
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.320 0.134 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,884,272
Number of Sequences: 59808
Number of extensions: 414172
Number of successful extensions: 1216
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1190
Number of HSP's gapped (non-prelim): 42
length of query: 365
length of database: 16,821,457
effective HSP length: 83
effective length of query: 282
effective length of database: 11,857,393
effective search space: 3343784826
effective search space used: 3343784826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -