GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000851-TA|BGIBMGA000851-PA|IPR009080|Aminoacyl-tRNA
synthetase, class 1a, anticodon-binding, IPR001278|Arginyl-tRNA
synthetase, class Ic, IPR008909|DALR anticodon binding
         (365 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    27   0.28 
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    23   3.5  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    23   3.5  
U61152-1|AAB41307.1|   45|Tribolium castaneum TATH2 protein.           22   8.0  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   8.0  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 261 EKNCGVSIPEFCSPALLTEDIIVDVVNELSKFENVLQR-SFEAYEACILVSYLFRLAK 317
           E  C V         +LT  +IV+    L  F+ +L+       +AC     +FR+A+
Sbjct: 348 EDQCDVRFRHITEITILTVQLIVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMAR 405


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 17/79 (21%), Positives = 32/79 (40%)

Query: 246 SGIKLQYLHCRLRSLEKNCGVSIPEFCSPALLTEDIIVDVVNELSKFENVLQRSFEAYEA 305
           +G +L+Y     RS      V         ++   I  D + ++  F + L ++F  Y+ 
Sbjct: 133 AGFRLEYKQLLKRSYLIISFVLFSLLARVPVMLMTISADFIQQIMLFVSALIKAFSKYQF 192

Query: 306 CILVSYLFRLAKCINKMFK 324
            +LV  L      IN+  +
Sbjct: 193 VVLVLQLQHRFGKINRTMR 211


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 17/79 (21%), Positives = 32/79 (40%)

Query: 246 SGIKLQYLHCRLRSLEKNCGVSIPEFCSPALLTEDIIVDVVNELSKFENVLQRSFEAYEA 305
           +G +L+Y     RS      V         ++   I  D + ++  F + L ++F  Y+ 
Sbjct: 133 AGFRLEYKQLLKRSYLIISFVLFSLLARVPVMLMTISADFIQQIMLFVSALIKAFSKYQF 192

Query: 306 CILVSYLFRLAKCINKMFK 324
            +LV  L      IN+  +
Sbjct: 193 VVLVLQLQHRFGKINRTMR 211


>U61152-1|AAB41307.1|   45|Tribolium castaneum TATH2 protein.
          Length = 45

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 126 FDKMLYIVDNSQADHFSSVFEIVK 149
           FD++  ++ +  ADH  S FE ++
Sbjct: 17  FDRLRQVIPSLDADHKLSKFETLQ 40


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)

Query: 277 LTEDIIVDVVNELS 290
           L +++I+DVVN LS
Sbjct: 114 LGDEVIIDVVNHLS 127


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.134    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,330
Number of Sequences: 317
Number of extensions: 3074
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 365
length of database: 114,650
effective HSP length: 58
effective length of query: 307
effective length of database: 96,264
effective search space: 29553048
effective search space used: 29553048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)