GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000851-TA|BGIBMGA000851-PA|IPR009080|Aminoacyl-tRNA
synthetase, class 1a, anticodon-binding, IPR001278|Arginyl-tRNA
synthetase, class Ic, IPR008909|DALR anticodon binding
         (365 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...   224   1e-59
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    29   1.0  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   3.2  
SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces p...    27   4.2  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    27   4.2  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    27   5.5  
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    26   7.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   7.3  
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po...    26   9.6  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    26   9.6  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    26   9.6  
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    26   9.6  
SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    26   9.6  

>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score =  224 bits (548), Expect = 1e-59
 Identities = 121/364 (33%), Positives = 205/364 (56%), Gaps = 8/364 (2%)

Query: 10  NVQNEARKYFSDIEQG-KISLENWKKIRNVTVHELENVYQRLGITFDAFHWESDYNGIAI 68
           ++ ++AR++F  +E G + SL+ W + R++++ +L++ Y RL I +D +  ES  +   +
Sbjct: 255 SLHDKAREFFKRMEDGDEESLKVWARFRDLSITKLKDTYDRLNIHYDEYDGESQVSLELM 314

Query: 69  RDLMDYLQKHNIISNDETGXXXXXXXXXX----XXFLKSDNSTLYLTRDVAALLDRHKKY 124
             ++D L+  N+I  D                     K D +TLYLTRD+     R++KY
Sbjct: 315 NKMVDELRSLNLIEEDGGALLIDLSKHDKKLGKAIVQKRDGTTLYLTRDIGTAYKRYEKY 374

Query: 125 DFDKMLYIVDNSQADHFSSVFEIVKQFNKKCTEGCEHIKFGRIKGMSTRKGNAVFLNDIL 184
            FDK +Y+V + Q  +FS +F+I +       + C HI +G ++GMSTRKG AVFL+DI+
Sbjct: 375 KFDKSIYVVSSQQDMYFSQLFKIFELMGFDWAKKCVHINYGLVQGMSTRKGKAVFLDDIM 434

Query: 185 DEAKQKMYEKQMQSKNTRQSAMN-EETCDILGTTAVVINDLKQRRQRDYEFNWDRALQSE 243
           + AK++M++   +++       N EE  DI+G TA+ I D   +R  +Y F+W R    E
Sbjct: 435 EVAKEEMHKVMQKNEEKYAQVENPEEVADIVGKTAIRIQDSTGKRINNYAFDWSRMTSFE 494

Query: 244 GDSGIKLQYLHCRLRSLEKNCGVSIPEF--CSPALLTEDIIVDVVNELSKFENVLQRSFE 301
           GD+G  LQY H RL S+ +N   +  E    +  LLTE    D+V  L ++ +VL+ +F 
Sbjct: 495 GDTGPYLQYAHSRLSSVRRNVNYTDEEIMGANLELLTEPDAYDLVRLLGQYPDVLKNAFR 554

Query: 302 AYEACILVSYLFRLAKCINKMFKEMKVKNVDQSTAEQRLLVFHAARIVVKTSLEILGVRP 361
             E   +V+YLF+L   ++K++  + V+  ++     RL +F AA+ V+   + +LG+ P
Sbjct: 555 FQETSTVVTYLFKLTHAVSKLYDILWVRGRERDIQLARLALFGAAKQVLNNGMTLLGLTP 614

Query: 362 LDEM 365
           L+ M
Sbjct: 615 LERM 618


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 160  EHIKFGRIKGMSTRKGNAVFLNDILDEAKQKMYEKQMQSKNTRQSAMNEETCDILGTTA 218
            E + + RI   S  K     +NDILD +K +    ++ S+     AM E+  + LGT A
Sbjct: 1027 EQLSYARIIQQSA-KSLLTVINDILDLSKVRAGMMKLTSQRFSVRAMMEDANETLGTLA 1084


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 9    ENVQNEARKYFSDIEQGKISLENWKKIRNVTVHELENVYQRLGITFDAFHWES 61
            EN  +   ++  + E+     E W+++++V   + +  Y  +G  F+   WES
Sbjct: 1826 ENAADSCVRHLENNEETDWKFEEWRQMQDVVKQDQDRSY--IGFHFENSKWES 1876


>SPAC343.12 |rds1||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 402

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 140 HFSSVFEIVKQFNKKCTEGCEHIKFGRIKGMSTRKGNAVFLNDILDEAKQKMYEKQMQ 197
           +F +V   +  F +  T+  E   +G +  + +R   A+ L  I  EA+Q+M  +Q+Q
Sbjct: 152 NFDTVGSFI-DFAQTLTKWSESGVYGFLPHLDSRAAAALLLQSITTEARQQMSLRQLQ 208


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 185 DEAKQKMYEKQMQSKNTRQSAMNEETCDILGTTAV 219
           D+ + K+YE QM  KN+    +N   C+ +  TA+
Sbjct: 835 DDCENKVYEGQMNDKNSSLDMVN--ACEGINQTAI 867


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 271 FCSPALLTEDIIVDVVNELSKFENVLQRSFEAYEACILVSYLFRLAK 317
           FC+     + +I+D  N+L K  N+L+ S+E     +L+  + R+ K
Sbjct: 319 FCTNFPNAQQLIIDNQNQLLKVANLLEPSYEL--PALLIKPIQRICK 363


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 311 YLFRLAKCINKMFKEMKVKNVDQSTAEQR 339
           YLF LAKC+  +  E K  +V +  AE R
Sbjct: 168 YLFELAKCLRHLSPESKDIHVFELEAEVR 196


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 190  KMYEKQMQSKNTRQSAMNEETCDILGTTAVVINDLKQRRQRDYEF 234
            K+Y   +Q   TR S   E    +LGT   V+    + + R++ F
Sbjct: 3309 KLYPFALQYPATRHSRREERMLQLLGTFNTVLRSKIEIQNRNFSF 3353


>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 10/37 (27%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 1  MNKLAETDENVQNEARKYFSDIEQGKISLEN-WKKIR 36
          +++  +T +NV NE +  F +I   ++++ + WK+I+
Sbjct: 9  LSEYLQTLDNVPNETKHIFDEISVKEVAVHDIWKRIQ 45


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 188 KQKMYEKQMQSKNTRQSAMNEE---TCDILGTTAVVINDLKQRRQR 230
           +QK  EK+   K+ R+++ NEE     D+ G      + LKQ++QR
Sbjct: 135 QQKKKEKRAALKHYREASDNEEDLKETDLYGDRDSFQSRLKQKKQR 180


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 46  VYQRLGITFDAFHWESDYNGIAIRDLM 72
           VY RLG+   A +W++   G+ I D +
Sbjct: 710 VYWRLGVQMVALNWQTYDTGLQINDAL 736


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 3   KLAETDENVQ-NEARKYFSDIEQGKISLENWKKI-----RNVTVHELENVYQRLGITFDA 56
           K+ E D   +   A + F D E GKISL N +++      N+   ELE + +   +  D 
Sbjct: 102 KIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELEAMIEEFDLDQDG 161

Query: 57  FHWESDYNGI 66
              E ++  I
Sbjct: 162 EINEQEFIAI 171


>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 27  ISLENWKKIRNVTVHELENVYQRLGITFDAFHWESDYNGI--AIRDLM--DYLQKHNI 80
           IS+E W K  +V + E E   Q+    F      S+   +  +++ L+  +YLQK  +
Sbjct: 293 ISIEKWAKYCDVDLQEFEKKLQKFWKNFGTLKLYSNIESLPASLKQLIKDEYLQKSKL 350


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,589,078
Number of Sequences: 5004
Number of extensions: 65417
Number of successful extensions: 216
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 204
Number of HSP's gapped (non-prelim): 16
length of query: 365
length of database: 2,362,478
effective HSP length: 74
effective length of query: 291
effective length of database: 1,992,182
effective search space: 579724962
effective search space used: 579724962
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)