Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000851-TA|BGIBMGA000851-PA|IPR009080|Aminoacyl-tRNA
synthetase, class 1a, anticodon-binding, IPR001278|Arginyl-tRNA
synthetase, class Ic, IPR008909|DALR anticodon binding
(365 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0458 + 3630218-3630274,3630383-3630507,3630635-3630710,363... 99 5e-21
01_01_0406 + 3059996-3060047,3060804-3060867,3060979-3061054,306... 89 4e-18
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 31 1.9
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696... 29 5.9
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 29 7.8
>05_01_0458 +
3630218-3630274,3630383-3630507,3630635-3630710,
3630884-3630985,3631075-3631290,3632217-3632297,
3633152-3633235,3633405-3633509,3634338-3634516,
3634681-3634765,3634889-3635090,3635165-3635234,
3635353-3635422,3635745-3635834,3636020-3636088,
3636520-3636618,3636804-3636914
Length = 606
Score = 99.1 bits (236), Expect = 5e-21
Identities = 84/351 (23%), Positives = 152/351 (43%), Gaps = 24/351 (6%)
Query: 32 WKKIRNVTVHELENVYQRLGITFDAFHWESDYNGIAIRDLMDYLQKHNIISNDETGXXXX 91
W KI ++ +E + VY+ L + + ES YN I +++ L +I E
Sbjct: 257 WNKICEISRNEFDMVYKLLNVKLEE-KGESFYNPF-IPQVLEELNNKGLIKESEGAKVIF 314
Query: 92 XXXXXXXXFL-KSDNSTLYLTRDVAALLDRHKKYDFDKMLYIVDNSQADHFSSVFEIVKQ 150
+ K D Y + D+AAL R + ++Y+ D Q HF F +
Sbjct: 315 IEGHQIPLIVVKRDGGFNYASTDLAALWYRLNVEKAEWIIYVTDVGQQQHFDMFFNAARM 374
Query: 151 FN------KKCTEGCEHIKFGRIKGMS-----TRKGNAVFLNDILDEAKQKMYEKQMQSK 199
+K H+ FG + G TR V L ++LDEAK + + +Q
Sbjct: 375 AGWLPDPKEKKYPKTNHVGFGLVLGSDGKRFRTRSTEVVRLIELLDEAKSRSKSELLQRL 434
Query: 200 NTRQSAMN------EETCDILGTTAVVINDLKQRRQRDYEFNWDRALQSEGDSGIKLQYL 253
++ E+T + +G AV DLK R +Y F++++ L +G++ + LQY
Sbjct: 435 TENGKIVDWTEEELEKTSEAVGYGAVKYADLKNNRLTNYTFSFEQMLSDKGNTAVYLQYA 494
Query: 254 HCRLRSLEKNCGVSIPEFCSPALLTEDIIVDVV--NELSKFENVLQRSFEAYEACILVSY 311
H R+ S+ + + E ++ D + V L +F V++ + +L Y
Sbjct: 495 HARICSIIRKSNKDVEELKMSGAISLDHPDERVLGLYLIRFAEVVEEACTNLLPNVLCEY 554
Query: 312 LFRLAKCINKMFKEMKVKNVDQSTAEQRLLVFHAARIVVKTSLEILGVRPL 362
L+ L++ + + +V + T+ RLL+ A +V++ E+LG+ P+
Sbjct: 555 LYNLSEMFTRFYTNCQVVGSPEETS--RLLLCQATAVVMRQCFELLGITPV 603
>01_01_0406 +
3059996-3060047,3060804-3060867,3060979-3061054,
3061142-3061243,3061327-3061542,3061615-3061695,
3062219-3062287,3062789-3062961,3063098-3063182,
3063290-3063491,3063577-3063646,3063956-3064025,
3064138-3064227,3064321-3064389,3064566-3064664,
3064814-3064924
Length = 542
Score = 89.4 bits (212), Expect = 4e-18
Identities = 90/364 (24%), Positives = 158/364 (43%), Gaps = 34/364 (9%)
Query: 31 NWKKIRNVTVHELENVYQRLGITFDA---FH------WESDYNGIAIRDLMDYLQKHNII 81
+W+ + N V +L++ Y+ FD F ES YN I +++ L +I
Sbjct: 184 DWEDVGNQAVGDLQSFYKASKKRFDDDPDFKERARQAGESFYNPY-IPPVLEELTNKGLI 242
Query: 82 SNDETGXXXXXXXXXXXXFLKSDNSTLYLTRDVAALLDRHKKYDFDKMLYIVDNSQADHF 141
+ G +K D Y + D+AAL R + ++Y+ D Q HF
Sbjct: 243 VESK-GARVIFVEDHPLIVIKQDGGFNYASTDLAALWYRLNVEKAEWIIYVTDVGQQRHF 301
Query: 142 SSVFEIVK------QFNKKCTEGCEHIKFGRIKGMS-----TRKGNAVFLNDILDEAKQK 190
+F K + N K H+ FG + G TR V L D+LDEAK +
Sbjct: 302 HMLFTAAKMAGWLPEQNGKKYPKASHVGFGLVLGSDGKRFRTRCSEVVRLVDLLDEAKAR 361
Query: 191 MYEKQMQSKNTRQSAMNEETCDILGTT-------AVVINDLKQRRQRDYEFNWDRALQSE 243
+ Q+ + T + + T D L T AV +DLK R DY F++D+ L +
Sbjct: 362 S-KAQLIKRFTGNGQIADWTDDELDRTSEAIGYGAVKYSDLKNNRLTDYTFSFDQMLSDK 420
Query: 244 GDSGIKLQYLHCRLRSLEKNCGVSIPEFCSPALLTEDIIVD--VVNELSKFENVLQRSFE 301
G++ + LQY H R+ S+ + + + +T + + L +F V++++
Sbjct: 421 GNTAVYLQYAHARICSIIRKASKDVEKLKMTGAITLGHPYERFLGLHLIQFTEVVEQACA 480
Query: 302 AYEACILVSYLFRLAKCINKMFKEMKVKNVDQSTAEQRLLVFHAARIVVKTSLEILGVRP 361
+ L YL+ L+ +K + +V + T+ RLL+ A I+++ +LG+ P
Sbjct: 481 DLQPHRLCDYLYSLSLTFSKFYTNCQVVGSPEETS--RLLLCEATGIIMRQCFHLLGITP 538
Query: 362 LDEM 365
+ ++
Sbjct: 539 VHKL 542
>03_02_0568 +
9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 30.7 bits (66), Expect = 1.9
Identities = 37/159 (23%), Positives = 62/159 (38%), Gaps = 9/159 (5%)
Query: 14 EARKYFSDI-EQGKISLENWKKIRNVTVHELE----NVYQRLGITFDAFHWESDYNGIAI 68
E R++ + EQ KI + V V E E +V++ + + + +D +
Sbjct: 510 EQRQFLESMNEQNKIYFSAKSEFLAVMVSEAEQVSNDVFKSISELKELLAFSADQQEVMF 569
Query: 69 -RDLMD--YLQKHNI-ISNDETGXXXXXXXXXXXXFLKSDNSTLYLTRDVAALLDRHKKY 124
RDL+ + K +I D G +S + L D L R ++
Sbjct: 570 KRDLVSAQVMSKTSIDFFEDIRGHASRLIEHMEQSQAESSSQLLKFEEDFKELSVREEQA 629
Query: 125 DFDKMLYIVDNSQADHFSSVFEIVKQFNKKCTEGCEHIK 163
DK+ I+ A + V + V Q N KC E +H+K
Sbjct: 630 ALDKIAGILAGLTAKKSTMVLDCVGQLNGKCREEQKHLK 668
>09_04_0308 +
16567361-16568854,16568946-16569068,16569372-16569649,
16570316-16571924,16572363-16573781
Length = 1640
Score = 29.1 bits (62), Expect = 5.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 183 ILDEAKQKMYEKQMQSKNTRQSAMNEETCDILGTTAVVIN 222
++DEA ++ EK Q K R+ EET +I+ T + N
Sbjct: 612 MMDEALDQILEKLEQMKTKRRRKSFEETTNIIKATTSIFN 651
>10_06_0131 -
11066033-11066251,11066548-11067012,11067102-11068177,
11068269-11068422,11068511-11068601,11069016-11069152
Length = 713
Score = 28.7 bits (61), Expect = 7.8
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 17 KYFSDIEQGKISLE----NWKKIRNVTVHELENVYQRLGITFDAFHWESDY 63
KYF++ QG++ + N K N V L + LGI +DA + SDY
Sbjct: 230 KYFAERYQGRLIVRFDDTNPSKESNEFVENLLKDIETLGIKYDAVTYTSDY 280
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.134 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,969,900
Number of Sequences: 37544
Number of extensions: 335892
Number of successful extensions: 886
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 875
Number of HSP's gapped (non-prelim): 5
length of query: 365
length of database: 14,793,348
effective HSP length: 83
effective length of query: 282
effective length of database: 11,677,196
effective search space: 3292969272
effective search space used: 3292969272
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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