Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000851-TA|BGIBMGA000851-PA|IPR009080|Aminoacyl-tRNA
synthetase, class 1a, anticodon-binding, IPR001278|Arginyl-tRNA
synthetase, class Ic, IPR008909|DALR anticodon binding
(365 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23169-7|AAL02449.1| 512|Caenorhabditis elegans Arginyl aa-trna... 154 1e-37
U12964-13|AAA91224.2| 713|Caenorhabditis elegans Arginyl aa-trn... 90 2e-18
U12964-14|AAU05575.1| 692|Caenorhabditis elegans Arginyl aa-trn... 82 7e-16
AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical ... 32 0.74
U41991-8|AAA83348.2| 500|Caenorhabditis elegans Hypothetical pr... 31 0.98
U40933-5|AAA81675.1| 1116|Caenorhabditis elegans Hypothetical pr... 31 0.98
U13072-2|AAK31397.2| 380|Caenorhabditis elegans Hypothetical pr... 30 2.3
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ... 30 2.3
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related... 30 2.3
Z79694-8|CAB01965.1| 872|Caenorhabditis elegans Hypothetical pr... 29 5.2
Z72506-9|CAA96622.1| 872|Caenorhabditis elegans Hypothetical pr... 29 5.2
X08068-1|CAA30857.1| 882|Caenorhabditis elegans paramyosin prot... 29 5.2
Z83234-7|CAB76745.1| 667|Caenorhabditis elegans Hypothetical pr... 29 6.9
Z82067-4|CAB76738.1| 667|Caenorhabditis elegans Hypothetical pr... 29 6.9
Z68113-1|CAA92151.1| 321|Caenorhabditis elegans Hypothetical pr... 29 6.9
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 29 6.9
Z27081-3|CAH19085.1| 869|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z27081-2|CAA81607.2| 937|Caenorhabditis elegans Hypothetical pr... 28 9.1
AC006661-10|AAF39887.1| 843|Caenorhabditis elegans Hypothetical... 28 9.1
>U23169-7|AAL02449.1| 512|Caenorhabditis elegans Arginyl aa-trna
synthetase protein2 protein.
Length = 512
Score = 154 bits (373), Expect = 1e-37
Identities = 100/349 (28%), Positives = 171/349 (48%), Gaps = 15/349 (4%)
Query: 32 WKKIRNVTVHELENVYQRLGITFDAFHWESDYNGIA---IRDLMDY-----LQKHNIISN 83
W++I++++ + L Y + FD + ES A ++L+D L I
Sbjct: 164 WQQIKDISKNHLSEFYNLFDVKFDKWLCESSQVRKAHQYAQELIDKGFTEDLDGKTIFRL 223
Query: 84 DETGXXXXXXXXXXXXFL-KSDNSTLYLTRDVAALLDRHKKYDFDKMLYIVDNSQADHFS 142
+ L KSD S+LYLTR++AA+LDR + D+ LY+VD +Q HF
Sbjct: 224 RDIDTEKKQSDGVNYAVLRKSDMSSLYLTREIAAILDRDAMFQADRYLYVVDRAQRQHFK 283
Query: 143 SVFEIVKQFNKK-CTEGCEHIKFGRIKGMSTRKGNAVFLNDILDEAKQKMYEKQMQSKN- 200
++ I+++ + EHI++GR++G+STR G + +I+++ ++ + SK
Sbjct: 284 ALKVILEKIGRSDLASKIEHIQYGRVRGLSTRNGRTEAVGEIIEKGRELALQFMKSSKTF 343
Query: 201 TRQSAMNEETCDILGTTAVVINDLKQRRQRDYEFNWDRALQSEGDSGIKLQYLHCRLRSL 260
A+ + ++L + VV N+LK+ R +YEF++ A ++ + LQ H RL S+
Sbjct: 344 CMDPAVESDIANVLSLSTVVFNELKRARNSEYEFSFQNAFALNQNNALALQMKHSRLSSI 403
Query: 261 EKNCGVSIP--EFCSP--ALLTEDIIVDVVNELSKFENVLQRSFEAYEACILVSYLFRLA 316
E+ P E C+ T D + ++ L+ E ++ S E EAC L L +A
Sbjct: 404 EEKHQHLFPQIEACTKFNDFDTNDDVKRLIRLLNDLEKAVELSAEKLEACQLTVQLIHVA 463
Query: 317 KCINKMFKEMKVKNVDQSTAEQRLLVFHAARIVVKTSLEILGVRPLDEM 365
+ K+++VK+ A RLL+F A R V+ L LG+ P M
Sbjct: 464 AAAGSVQKQLRVKDQPDEVAVPRLLLFSAVRNVLAEGLRFLGITPARSM 512
>U12964-13|AAA91224.2| 713|Caenorhabditis elegans Arginyl aa-trna
synthetase protein1, isoform a protein.
Length = 713
Score = 90.2 bits (214), Expect = 2e-18
Identities = 75/286 (26%), Positives = 134/286 (46%), Gaps = 23/286 (8%)
Query: 101 LKSDNSTLYLTRDVAALLDRHKKYDFDKMLYIVDNSQADHFSSVFEIVKQFN--KKCTEG 158
+KSD Y T D+AAL R + D +Y+VD+ Q+ H +V+ + F + +
Sbjct: 430 VKSDGGFTYDTSDLAALKYRMLEEKCDWNIYVVDSGQSLHLETVYAAGRDFGWYDESIQR 489
Query: 159 CEHIKFGRIKG-----MSTRKGNAVFLNDILDEAKQKMYEKQMQSKNTRQSAMNEETC-- 211
EH+ FG + G TR G V L D+L E ++ EK ++ R++AM+EE
Sbjct: 490 VEHVAFGLVLGDDKKKFKTRSGETVRLLDLLSEGVKRATEKLIEKG--RETAMSEEQLVA 547
Query: 212 --DILGTTAVVINDLKQRRQRDYEFNWDRALQSEGDSGIKLQYLHCRLRSLEKNCGVSIP 269
D + V DL R +DY F++DR L+ G++ + L Y + R++S+ + V
Sbjct: 548 ARDAVAFGCVKYADLSHTRTQDYVFSFDRMLEDRGNTAVYLLYAYTRIQSIFEKDEVKNV 607
Query: 270 EFCSPALLTEDIIVD------VVNELSKFENVLQRSFEAYEACILVSYLFRLAKCINKMF 323
+ T + +D + +L K + + ++ + Y+++LA + +
Sbjct: 608 DLVKYIASTPTLPLDHPGEFKLAKQLLKLSDCVLLVLDSLMLHQMCDYVYQLATLFHDFY 667
Query: 324 KEMKV---KNVDQSTAE-QRLLVFHAARIVVKTSLEILGVRPLDEM 365
E V K ++ RL + R V+ T +ILG+R +++M
Sbjct: 668 NECYVIENKEGEKPFVHMHRLALCDVTRKVMSTCFKILGLREVNKM 713
>U12964-14|AAU05575.1| 692|Caenorhabditis elegans Arginyl aa-trna
synthetase protein1, isoform b protein.
Length = 692
Score = 81.8 bits (193), Expect = 7e-16
Identities = 54/171 (31%), Positives = 88/171 (51%), Gaps = 13/171 (7%)
Query: 101 LKSDNSTLYLTRDVAALLDRHKKYDFDKMLYIVDNSQADHFSSVFEIVKQFN--KKCTEG 158
+KSD Y T D+AAL R + D +Y+VD+ Q+ H +V+ + F + +
Sbjct: 430 VKSDGGFTYDTSDLAALKYRMLEEKCDWNIYVVDSGQSLHLETVYAAGRDFGWYDESIQR 489
Query: 159 CEHIKFGRIKG-----MSTRKGNAVFLNDILDEAKQKMYEKQMQSKNTRQSAMNEETC-- 211
EH+ FG + G TR G V L D+L E ++ EK ++ R++AM+EE
Sbjct: 490 VEHVAFGLVLGDDKKKFKTRSGETVRLLDLLSEGVKRATEKLIEKG--RETAMSEEQLVA 547
Query: 212 --DILGTTAVVINDLKQRRQRDYEFNWDRALQSEGDSGIKLQYLHCRLRSL 260
D + V DL R +DY F++DR L+ G++ + L Y + R++S+
Sbjct: 548 ARDAVAFGCVKYADLSHTRTQDYVFSFDRMLEDRGNTAVYLLYAYTRIQSI 598
>AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical
protein Y46G5A.4 protein.
Length = 2145
Score = 31.9 bits (69), Expect = 0.74
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 110 LTRDVAALLDRHKKYDFDKMLYIVDNSQ----ADHFSSVFEIVKQFNKKCTEGCEHIKFG 165
L LLD+ +DK I+ ++ A HF +E ++ +NK E C I
Sbjct: 949 LIHTACVLLDKAGLIKYDKRSGIIQATELGRIASHFYCTYESMQTYNKLLVETCSDIDLF 1008
Query: 166 RIKGMST 172
RI MS+
Sbjct: 1009 RIFSMSS 1015
>U41991-8|AAA83348.2| 500|Caenorhabditis elegans Hypothetical
protein C42D4.2 protein.
Length = 500
Score = 31.5 bits (68), Expect = 0.98
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 9 ENVQNEARKYFSDIEQGKISLENWKKIRNVTVHELE-NVYQRLGITFDAFHWESDYNGIA 67
EN + KY SD ++GKI +N K + + ++ V + L A+H+E Y A
Sbjct: 276 ENYEEVNEKYRSDSKEGKIEFDNVKNATQIMLIQIRTRVNKILKKNIPAYHYEYAYPKHA 335
Query: 68 --IRDLMDYLQKHNIISNDETGXXXXXXXXXXXXFLKSDN 105
DL + H I ++ F+K+ N
Sbjct: 336 NHTDDLFFIMGVHPFIQDENEIKLGNFYRSMFLNFIKTGN 375
>U40933-5|AAA81675.1| 1116|Caenorhabditis elegans Hypothetical
protein F20D12.2 protein.
Length = 1116
Score = 31.5 bits (68), Expect = 0.98
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 14/147 (9%)
Query: 110 LTRDVAALLDRHKKYDFDK-MLYIVDNSQADHFSSVFEIVKQFNKKCTEGC-EHIKFGRI 167
L +A L +H DF+K +++ + + V + ++C E C E ++ RI
Sbjct: 245 LIEKLAMLKGKHCPDDFEKYQIFVKRDGFLCQLREINSPVIRNLERCEEMCTEKERYQRI 304
Query: 168 --KGMSTRKGNAVFLNDILDEAKQKMY-------EKQMQSKNTRQSAMNEETCDILGTTA 218
KG+S + + V D+ E K Y E+ + + + MN+ TC +L
Sbjct: 305 VQKGVSPYECDIVS-GDVSHEMMVKQYARSAADQERPLPHELRSEKIMNQTTCYLLHNVL 363
Query: 219 VVINDLKQRRQRDYEFNWD--RALQSE 243
D +R Y F W+ RAL+ E
Sbjct: 364 DDFPDSADQRGAWYNFLWNRTRALRKE 390
>U13072-2|AAK31397.2| 380|Caenorhabditis elegans Hypothetical
protein C07D10.5 protein.
Length = 380
Score = 30.3 bits (65), Expect = 2.3
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 220 VINDLKQRRQRDYEFNWDRALQSEGDSGIKLQYLHCRLRSLEKNCGVSIPEFCSPALLTE 279
+IN+ +R D+E + + + + YL C + + +SI FCSP L +
Sbjct: 139 IINEELERMFPDHEVT-----EVDHNKAASVPYLLCTIDDVTVIIKISIKPFCSPQFLAK 193
Query: 280 DII---VDVVNELSKFENVLQR 298
D+I + N + N L +
Sbjct: 194 DVINQYASIDNRFNTLANYLHK 215
>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
repeats, ras-likedomain, kinase protein 1 protein.
Length = 2395
Score = 30.3 bits (65), Expect = 2.3
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 212 DILGTTAVVINDLKQRRQRDYEFNWDRALQSEGDSGIKLQYLHCRLRSLEKNCGVSIPEF 271
D++ + ND+K Y W+ + E ++ + L + K GV +
Sbjct: 1143 DVILINSTSRNDVKALLNTIYRTAWEVRMGKERAMEQQIPSSYIALMKVTKELGVEFRKE 1202
Query: 272 CSPALLTEDIIVDVVNE--LSKFENVLQRSFEAYEAC 306
PA++T + + V + +SKF + E Y AC
Sbjct: 1203 GQPAVMTVEAYRERVKKRMISKFGRPFRDDIEFYAAC 1239
>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
kinase protein.
Length = 2393
Score = 30.3 bits (65), Expect = 2.3
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 212 DILGTTAVVINDLKQRRQRDYEFNWDRALQSEGDSGIKLQYLHCRLRSLEKNCGVSIPEF 271
D++ + ND+K Y W+ + E ++ + L + K GV +
Sbjct: 1141 DVILINSTSRNDVKALLNTIYRTAWEVRMGKERAMEQQIPSSYIALMKVTKELGVEFRKE 1200
Query: 272 CSPALLTEDIIVDVVNE--LSKFENVLQRSFEAYEAC 306
PA++T + + V + +SKF + E Y AC
Sbjct: 1201 GQPAVMTVEAYRERVKKRMISKFGRPFRDDIEFYAAC 1237
>Z79694-8|CAB01965.1| 872|Caenorhabditis elegans Hypothetical
protein F07A5.7 protein.
Length = 872
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 1 MNKLAETDENVQNEARKYFSDIEQGKISLENWKKIRNVTVHELENVYQRL 50
+N LA+ + +Q E ++ K+ L+N + ++ +LE +RL
Sbjct: 197 VNDLAQQRQRLQAENNDLLKEVHDQKVQLDNLQHVKYTLAQQLEEARRRL 246
>Z72506-9|CAA96622.1| 872|Caenorhabditis elegans Hypothetical
protein F07A5.7 protein.
Length = 872
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 1 MNKLAETDENVQNEARKYFSDIEQGKISLENWKKIRNVTVHELENVYQRL 50
+N LA+ + +Q E ++ K+ L+N + ++ +LE +RL
Sbjct: 197 VNDLAQQRQRLQAENNDLLKEVHDQKVQLDNLQHVKYTLAQQLEEARRRL 246
>X08068-1|CAA30857.1| 882|Caenorhabditis elegans paramyosin
protein.
Length = 882
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 1 MNKLAETDENVQNEARKYFSDIEQGKISLENWKKIRNVTVHELENVYQRL 50
+N LA+ + +Q E ++ K+ L+N + ++ +LE +RL
Sbjct: 213 VNDLAQQRQRLQAENNDLLKEVHDQKVQLDNLQHVKYTLAQQLEEARRRL 262
>Z83234-7|CAB76745.1| 667|Caenorhabditis elegans Hypothetical
protein W03H9.4 protein.
Length = 667
Score = 28.7 bits (61), Expect = 6.9
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 181 NDILDEAKQKMYEKQMQSKNTRQSAMNEETCDILGTTAVVINDLKQRRQRDYEFNWDRAL 240
N+ +E + + EK+M+ R+ A E+T +N+ + F W + L
Sbjct: 53 NESAEEKRARRMEKKMRKDAKRKDADAEDTLIPPELNYTNLNNPFNDTKLTQTFVWGKKL 112
Query: 241 QSEGDSGI 248
+ EG SG+
Sbjct: 113 EREGKSGL 120
>Z82067-4|CAB76738.1| 667|Caenorhabditis elegans Hypothetical
protein W03H9.4 protein.
Length = 667
Score = 28.7 bits (61), Expect = 6.9
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 181 NDILDEAKQKMYEKQMQSKNTRQSAMNEETCDILGTTAVVINDLKQRRQRDYEFNWDRAL 240
N+ +E + + EK+M+ R+ A E+T +N+ + F W + L
Sbjct: 53 NESAEEKRARRMEKKMRKDAKRKDADAEDTLIPPELNYTNLNNPFNDTKLTQTFVWGKKL 112
Query: 241 QSEGDSGI 248
+ EG SG+
Sbjct: 113 EREGKSGL 120
>Z68113-1|CAA92151.1| 321|Caenorhabditis elegans Hypothetical
protein E03G2.1 protein.
Length = 321
Score = 28.7 bits (61), Expect = 6.9
Identities = 11/44 (25%), Positives = 25/44 (56%)
Query: 321 KMFKEMKVKNVDQSTAEQRLLVFHAARIVVKTSLEILGVRPLDE 364
+ ++++++K Q +Q LL R+V K + + G+R ++E
Sbjct: 205 RKYRDVELKQKMQKRKQQNLLEARELRLVKKAKMSVRGIRNMEE 248
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/58 (22%), Positives = 31/58 (53%)
Query: 110 LTRDVAALLDRHKKYDFDKMLYIVDNSQADHFSSVFEIVKQFNKKCTEGCEHIKFGRI 167
+T+ A +L + K+ + + ++DN + H ++F +KQ + + ++ E I+ I
Sbjct: 1537 MTKSEAEMLKKESKWQKNVLRVMIDNPFSSHSHAIFAALKQISPQVSQLREIIESSEI 1594
>Z27081-3|CAH19085.1| 869|Caenorhabditis elegans Hypothetical
protein M01A8.2b protein.
Length = 869
Score = 28.3 bits (60), Expect = 9.1
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 136 SQADHFSSVFEIVKQFNKKCTEGCEHIKFGRIKGMSTRKGNAVF-LNDILDEAKQKMYEK 194
S+ H + FE + E E K G I +K + + L +LDEA++K E
Sbjct: 477 SRLQHSTHAFEATLIVMNRINEDNER-KLGNISEQYEKKVSELGDLKKMLDEARKKFEED 535
Query: 195 QMQSKNTRQSAM 206
Q KN+ Q +
Sbjct: 536 VEQMKNSNQQVI 547
>Z27081-2|CAA81607.2| 937|Caenorhabditis elegans Hypothetical
protein M01A8.2a protein.
Length = 937
Score = 28.3 bits (60), Expect = 9.1
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 136 SQADHFSSVFEIVKQFNKKCTEGCEHIKFGRIKGMSTRKGNAVF-LNDILDEAKQKMYEK 194
S+ H + FE + E E K G I +K + + L +LDEA++K E
Sbjct: 545 SRLQHSTHAFEATLIVMNRINEDNER-KLGNISEQYEKKVSELGDLKKMLDEARKKFEED 603
Query: 195 QMQSKNTRQSAM 206
Q KN+ Q +
Sbjct: 604 VEQMKNSNQQVI 615
>AC006661-10|AAF39887.1| 843|Caenorhabditis elegans Hypothetical
protein H20J04.1 protein.
Length = 843
Score = 28.3 bits (60), Expect = 9.1
Identities = 36/168 (21%), Positives = 68/168 (40%), Gaps = 11/168 (6%)
Query: 103 SDNSTLYLTRDVAALLDRHKKYDFDKMLYIVDNSQAD----HFSSVFEIVKQFNKKCTEG 158
SD T + V+ R + D +++ N D HF V E +K+FN++ E
Sbjct: 451 SDEFTNAASSSVSGYHSRVRSMDKSNCYFVIKNDNFDNADKHFPKVVEKLKKFNQEAME- 509
Query: 159 CEHIKFGRIKGMSTRKGNAVFLNDILDEAKQKMYEKQMQSKNTRQSA--MN-EETCDILG 215
+ + T + +++++ K K+ Q + +N +T G
Sbjct: 510 LKALISKIPMWQETTENLEMYIDETFGPFKDKINTSQQDLSKVKGGIGFVNLHKTMFATG 569
Query: 216 TTAVVINDLKQRRQRDYEFNWDRALQSEGDSGIKLQYLHCRLRSLEKN 263
T V +N+L++ + N + L +G S +K Q L+ + KN
Sbjct: 570 ETTVDLNELQKIKTTGVN-NVQKRL--DGLSDLKTQSLYKEVIRFRKN 614
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.134 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,384,196
Number of Sequences: 27539
Number of extensions: 340162
Number of successful extensions: 984
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 963
Number of HSP's gapped (non-prelim): 22
length of query: 365
length of database: 12,573,161
effective HSP length: 82
effective length of query: 283
effective length of database: 10,314,963
effective search space: 2919134529
effective search space used: 2919134529
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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