GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000851-TA|BGIBMGA000851-PA|IPR009080|Aminoacyl-tRNA
synthetase, class 1a, anticodon-binding, IPR001278|Arginyl-tRNA
synthetase, class Ic, IPR008909|DALR anticodon binding
         (365 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   2.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   2.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.1  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   5.4  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   5.4  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 19  FSDI-EQGKISLENWKKIRNVTVHELENVYQ--RLGITFDAFHWESDYNG 65
           F+DI E+ + S    ++   +  +  +N+ Q  R  ITF    WE  YNG
Sbjct: 391 FNDIFEKDQASFLERERFLGIINNIFKNMSQIEREAITFQYTDWEEVYNG 440


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 19  FSDI-EQGKISLENWKKIRNVTVHELENVYQ--RLGITFDAFHWESDYNG 65
           F+DI E+ + S    ++   +  +  +N+ Q  R  ITF    WE  YNG
Sbjct: 391 FNDIFEKDQASFLERERFLGIINNIFKNMSQIEREAITFQYTDWEEVYNG 440


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 215 GTTAVVINDLKQRRQRDYEFNWDRALQSEGD 245
           GTT +    L++RRQ D E   DR    E +
Sbjct: 257 GTTTIPTRRLRKRRQNDGEGADDRDDDEENE 287


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 139 DHFSSVFEIVKQFNKKCT 156
           +H  ++F+I+K  N+K T
Sbjct: 57  NHIQNIFKIIKSTNEKIT 74


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 139 DHFSSVFEIVKQFNKKCT 156
           +H  ++F+I+K  N+K T
Sbjct: 40  NHIQNIFKIIKSTNEKIT 57


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,227
Number of Sequences: 429
Number of extensions: 3796
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 5
length of query: 365
length of database: 140,377
effective HSP length: 59
effective length of query: 306
effective length of database: 115,066
effective search space: 35210196
effective search space used: 35210196
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)