GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000851-TA|BGIBMGA000851-PA|IPR009080|Aminoacyl-tRNA
synthetase, class 1a, anticodon-binding, IPR001278|Arginyl-tRNA
synthetase, class Ic, IPR008909|DALR anticodon binding
         (365 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26300.1 68417.m03783 arginyl-tRNA synthetase, putative / arg...   109   4e-24
At1g66530.1 68414.m07559 arginyl-tRNA synthetase, putative / arg...   104   1e-22
At2g32240.1 68415.m03940 expressed protein contains Pfam profile...    31   1.2  
At1g33410.1 68414.m04136 expressed protein                             30   2.8  
At3g11420.1 68416.m01393 fringe-related protein similar to hypot...    29   6.5  

>At4g26300.1 68417.m03783 arginyl-tRNA synthetase, putative /
           arginine--tRNA ligase, putative similar to SP|P37880
           Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA
           ligase) (ArgRS) {Cricetulus longicaudatus}; contains
           Pfam profiles PF00750: arginyl-tRNA synthetase, PF03485:
           arginyl-tRNA synthetase N-terminal domain
          Length = 642

 Score =  109 bits (261), Expect = 4e-24
 Identities = 91/373 (24%), Positives = 166/373 (44%), Gaps = 20/373 (5%)

Query: 6   ETDENVQNEARKYFSDIEQGK-ISLENWKKIRNVTVHELENVYQRLGITFDAFHWESDYN 64
           + DE  + +A++    ++ G  +  + W KI +++  E   VYQRL +  +    ES YN
Sbjct: 271 DLDEAFKEKAQQAVVRLQGGDPVYRKAWAKICDISRTEFAKVYQRLRVELEE-KGESFYN 329

Query: 65  GIAIRDLMDYLQKHNIISNDETGXXXXXXXXXXXXFL-KSDNSTLYLTRDVAALLDRHKK 123
              I  +++ L    ++   E               + KSD    Y + D+ AL  R  +
Sbjct: 330 P-HIAKVIEELNSKGLVEESEGARVIFLEGFDIPLMVVKSDGGFNYASTDLTALWYRLNE 388

Query: 124 YDFDKMLYIVDNSQADHFSSVFEIVKQF-----NKKCTEGCEHIKFGRIKG-----MSTR 173
              + ++Y+ D  Q  HF+  F+  ++      N K      H+ FG + G       TR
Sbjct: 389 EKAEWIIYVTDVGQQQHFNMFFKAARKAGWLPDNDKTYPRVNHVGFGLVLGEDGKRFRTR 448

Query: 174 KGNAVFLNDILDEAKQKMYEKQMQSKNTRQSAMNE--ETCDILGTTAVVINDLKQRRQRD 231
             + V L D+LDEAK +     ++    ++    E  +T + +G  AV   DLK  R  +
Sbjct: 449 ATDVVRLVDLLDEAKTRSKLALIERGKDKEWTPEELDQTAEAVGYGAVKYADLKNNRLTN 508

Query: 232 YEFNWDRALQSEGDSGIKLQYLHCRLRSLEKNCGVSIPEFCSPALLTEDIIVD--VVNEL 289
           Y F++D+ L  +G++ + L Y H R+ S+ +  G  I E      L  D   +  +   L
Sbjct: 509 YTFSFDQMLNDKGNTAVYLLYAHARICSIIRKSGKDIDELKKTGKLALDHADERALGLHL 568

Query: 290 SKFENVLQRSFEAYEACILVSYLFRLAKCINKMFKEMKVKNVDQSTAEQRLLVFHAARIV 349
            +F   ++ +       +L  YL+ L++   + +   +V    + T+  RLL+  A  IV
Sbjct: 569 LRFAETVEEACTNLLPSVLCEYLYNLSEHFTRFYSNCQVNGSPEETS--RLLLCEATAIV 626

Query: 350 VKTSLEILGVRPL 362
           ++    +LG+ P+
Sbjct: 627 MRKCFHLLGITPV 639


>At1g66530.1 68414.m07559 arginyl-tRNA synthetase, putative /
           arginine--tRNA ligase, putative similar to SP|P37880
           Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA
           ligase) (ArgRS) {Cricetulus longicaudatus}; contains
           Pfam profiles PF00750: arginyl-tRNA synthetase, PF03485:
           arginyl-tRNA synthetase N-terminal domain
          Length = 590

 Score =  104 bits (249), Expect = 1e-22
 Identities = 90/350 (25%), Positives = 155/350 (44%), Gaps = 27/350 (7%)

Query: 32  WKKIRNVTVHELENVYQRLGITFDAFHWESDYNGIAIRDLMDYLQKHNIISNDETGXXXX 91
           W KI  ++ +E   VY+RL I  +    ES YN   I ++++ L    ++   +      
Sbjct: 246 WAKICEISRNEFAKVYKRLRIELEE-KGESFYNPY-IANVIEELSSKGLVEESKGARVIF 303

Query: 92  XXXXXXXXFL-KSDNSTLYLTRDVAALLDRHKKYDFDKMLYIVDNSQADHFSSVFEIVKQ 150
                    + KSD    Y + D+ AL  R  +   + ++Y+ D  Q  HF   F+  ++
Sbjct: 304 IEGFKIPLIVVKSDGGFNYASTDLTALWYRLNEEKAEWIIYVTDVGQQQHFDMFFKAARK 363

Query: 151 F-----NKKCTEGCEHIKFGRIKG-----MSTRKGNAVFLNDILDEAKQKMYEKQMQSKN 200
                 + K      H+ FG + G       TR    V L D+LDEAK +     ++   
Sbjct: 364 AGWLPDDDKTYPRVSHVGFGLVLGDDNKRFRTRAAEVVRLADLLDEAKDRSKAALIERGK 423

Query: 201 TRQSAMNE--ETCDILGTTAVVINDLKQRRQRDYEFNWDRALQSEGDSGIKLQYLHCRLR 258
            ++ +  E  +  + +G  A+   DLK  R   Y F++D+ L  +GD+ + L Y H R+ 
Sbjct: 424 DKEWSPEELDQIAEAVGYGALKYADLKTNRITGYTFSFDQMLNDKGDTAVYLLYAHARIC 483

Query: 259 SLEKNCGVSIPEFCSPALLTEDIIVDVVNELSKFENVLQRSFEAYEAC------ILVSYL 312
           S+ +  G  I E       T  I +D   E +   ++LQ +    EAC      +L  YL
Sbjct: 484 SIIRKSGKDIDELKK----TGKIALDHAAERALGLHLLQFAETVEEACTTLLPNVLCKYL 539

Query: 313 FRLAKCINKMFKEMKVKNVDQSTAEQRLLVFHAARIVVKTSLEILGVRPL 362
           + L++   K +   +V    + T+  RLL+  A  IV++    +LG+ P+
Sbjct: 540 YYLSEEFTKFYSNCQVNGSAEETS--RLLLCEATAIVMRKCFHLLGITPV 587


>At2g32240.1 68415.m03940 expressed protein contains Pfam profile:
           PF04508 viral A-type inclusion protein repeat
          Length = 775

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/61 (24%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 186 EAKQKMYEKQMQSKNTRQSAMNEETCDILGTTAVVINDLKQRRQRDYEFNWDRALQSEGD 245
           E K K YE+Q+   + + S++ E+    LG  A     + ++ +++++   +++LQS  +
Sbjct: 275 EGKIKSYEEQLAEASGKSSSLKEKLEQTLGRLAAA-ESVNEKLKQEFDQAQEKSLQSSSE 333

Query: 246 S 246
           S
Sbjct: 334 S 334


>At1g33410.1 68414.m04136 expressed protein
          Length = 1459

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 12/71 (16%)

Query: 250 LQYLHCRLRSLEKNCGVSIPEFCSPALLTEDIIVDVVNELSKFENVLQRSFEAYEACILV 309
           LQYL  + +S++KN G ++ + CS  L         V   S+F  V+  S  A++  +L+
Sbjct: 629 LQYLVPK-KSMQKNDGEALSDICSSIL---------VQATSQFVKVMFES--AFDIFLLI 676

Query: 310 SYLFRLAKCIN 320
           SYL  +A  +N
Sbjct: 677 SYLLNIAGQVN 687


>At3g11420.1 68416.m01393 fringe-related protein similar to
           hypothetical protein GB:AAC23643 [Arabidopsis thaliana] 
           + weak similarity to Fringe [Schistocerca
           gregaria](GI:6573138);Fringe encodes an extracellular
           protein that regulates Notch signalling.
          Length = 505

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 100 FLKSDNSTLYLTRDVAALLDRHKKYDFDKMLYIVDNSQA 138
           F+  D+ T++ T ++  +L    KYD ++M YI  NS++
Sbjct: 186 FVMGDDDTVFFTENLVKVLS---KYDHEQMWYIGGNSES 221


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.134    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,800,489
Number of Sequences: 28952
Number of extensions: 308226
Number of successful extensions: 859
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 5
length of query: 365
length of database: 12,070,560
effective HSP length: 82
effective length of query: 283
effective length of database: 9,696,496
effective search space: 2744108368
effective search space used: 2744108368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)