Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000850-TA|BGIBMGA000850-PA|IPR001478|PDZ/DHR/GLGF
         (433 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   7e-07
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.20 
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.20 
SB_25105| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.45 
SB_3725| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.79 
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_403| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   1.8  
SB_27031| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.4  
SB_26957| Best HMM Match : PDZ (HMM E-Value=0)                         31   2.4  
SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_4588| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.3  
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.7  

>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1929

 Score = 52.4 bits (120), Expect = 7e-07
 Identities = 25/64 (39%), Positives = 35/64 (54%)

Query: 24  ASSPLMELRPSERCPALQYXXXXXXXXXXXXXXXXKGDFLVAINGEDVSAASHEHVVELI 83
           A +P ++ +P+   PALQY                  DF++ + GEDV+ A+H HVVELI
Sbjct: 700 AQTPRLDFQPTLEFPALQYIGEVERGGEADRKGVKCKDFILEVEGEDVTTATHTHVVELI 759

Query: 84  RNSG 87
           R SG
Sbjct: 760 RRSG 763


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 34.3 bits (75), Expect = 0.20
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 8/83 (9%)

Query: 2    ECRTVVLHRARRGFGFVLRGAKASSPLMELRPSERCPALQYXXXXXXXXXXXXXXXXKGD 61
            E  T+ L +  RGFGF L  A +S P ++         +                   GD
Sbjct: 1905 ELYTMQLRKGPRGFGFSLVAAPSSVPNLQ--------GIFIKTISPGSVAEEDGRLRVGD 1956

Query: 62   FLVAINGEDVSAASHEHVVELIR 84
             ++ +NGEDV   SH  V+ ++R
Sbjct: 1957 QILKVNGEDVQGMSHARVIGMLR 1979


>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2149

 Score = 34.3 bits (75), Expect = 0.20
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 60  GDFLVAINGEDVSAASHEHVVELIRNSGA 88
           GD ++ ING +V   +H HVVEL++ SG+
Sbjct: 335 GDHILEINGLNVRNKTHAHVVELLKGSGS 363



 Score = 34.3 bits (75), Expect = 0.20
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 60  GDFLVAINGEDVSAASHEHVVELIRNSGA 88
           GD ++ ING +V   +H HVVEL++ SG+
Sbjct: 503 GDHILEINGLNVRNKTHAHVVELLKGSGS 531



 Score = 31.1 bits (67), Expect = 1.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 256  NSPPYSPAKGPGKVYASVAEMKRSRAKLW 284
            N+ PYSP K P  V   V+  KRS+ K W
Sbjct: 1955 NNKPYSPVKPPLPVKPDVSSTKRSQPKDW 1983


>SB_25105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 33.1 bits (72), Expect = 0.45
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 60 GDFLVAINGEDVSAASHEHVVELIRN 85
          GD ++ +NGEDV    H  VVE IR+
Sbjct: 7  GDIVIGVNGEDVKWGEHHDVVETIRH 32


>SB_3725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1126

 Score = 32.3 bits (70), Expect = 0.79
 Identities = 11/28 (39%), Positives = 20/28 (71%)

Query: 60  GDFLVAINGEDVSAASHEHVVELIRNSG 87
           GD ++A+NGED+  A+H+  V  ++ +G
Sbjct: 337 GDAILAVNGEDLRHATHDEAVRALKRAG 364


>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 23/93 (24%)

Query: 1   MECRTVVLHR-ARRGFGFVLRGA--KASSPLMEL---RPSERCPALQYXXXXXXXXXXXX 54
           M+ R + L+R A  GFGFV+  +  K+ S +  +    P++RC  L              
Sbjct: 889 MDYRDITLNRGAHEGFGFVILSSVHKSGSTIGRIIQGSPADRCRELYV------------ 936

Query: 55  XXXXKGDFLVAINGEDVSAASHEHVVELIRNSG 87
                GD LVA+NG  +    H  +V  I+ SG
Sbjct: 937 -----GDKLVAVNGTSIVGMHHSDIVNTIKQSG 964


>SB_403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1357

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 60  GDFLVAINGEDVSAASHEHVVELIRNS 86
           GD +V ING+ +   SHE  + LIR++
Sbjct: 558 GDEIVGINGKSIKGKSHEEAMNLIRHT 584


>SB_27031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 60  GDFLVAINGEDVSAASHEHVVELI 83
           G  ++ INGE V   SH+H+V+L+
Sbjct: 365 GHRIIEINGESVVVTSHQHIVDLL 388


>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
          Length = 1685

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 60   GDFLVAINGEDVSAASHEHVVELIRNS 86
            GD ++ ++G D+  ASHE  VE+IR +
Sbjct: 1340 GDQILEVDGHDLRNASHEEAVEVIRRA 1366


>SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1501

 Score = 29.5 bits (63), Expect = 5.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 60   GDFLVAINGEDVSAASHEHVVELIRNSGA 88
            GD L+A+NGE +   S E   E +  SGA
Sbjct: 1027 GDQLIAVNGESLIGVSQEKAAECMVRSGA 1055


>SB_4588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 729

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 272 SVAEMKRSRAKLWSKCPGTLRREFHSTPDLAAELAPHPPRTR 313
           S ++M   R  L +    +LR +F  TP +++E  P  PR R
Sbjct: 535 STSDMSAQRKLLTADLQKSLRTKFGETPKISSETRPCAPRER 576


>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)

Query: 59  KGDFLVAINGEDVSAASHEHVVELIRNS 86
           +GD L+++NG  V   +HE  V+L++ +
Sbjct: 578 RGDQLLSVNGVSVEGENHEKAVDLLKEA 605


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.129    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,947,457
Number of Sequences: 59808
Number of extensions: 346842
Number of successful extensions: 1722
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1691
Number of HSP's gapped (non-prelim): 30
length of query: 433
length of database: 16,821,457
effective HSP length: 84
effective length of query: 349
effective length of database: 11,797,585
effective search space: 4117357165
effective search space used: 4117357165
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)