GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000850-TA|BGIBMGA000850-PA|IPR001478|PDZ/DHR/GLGF
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0486 - 3738887-3738986,3739557-3740826,3741894-3741966           33   0.59 
02_02_0015 + 6109552-6109650,6110006-6110078,6111937-6111998,611...    31   2.4  
04_01_0445 + 5812277-5813893                                           30   4.1  
10_08_0183 - 15522241-15523866                                         29   5.5  
10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909...    29   5.5  
08_02_1613 + 28236989-28238593                                         29   7.2  
02_01_0085 + 610872-611297                                             29   7.2  

>11_01_0486 - 3738887-3738986,3739557-3740826,3741894-3741966
          Length = 480

 Score = 32.7 bits (71), Expect = 0.59
 Identities = 27/105 (25%), Positives = 38/105 (36%), Gaps = 4/105 (3%)

Query: 182 SAAGKSSSAESVQQPXXXXXXXXXXPRTASVRQRPASSRITAAELEELFQRQAV--ADAP 239
           +AA      E    P           R+ S     A++   AA  +   Q      A A 
Sbjct: 35  AAAAAEGGMEQQAAPSSSTSTSTNSSRSTSDHHAAAAAAAAAAAAQVAHQHHPFYYAAAQ 94

Query: 240 GGNNAMMIRSAFQGGANSPP--YSPAKGPGKVYASVAEMKRSRAK 282
           GG N M   ++F G     P   +P  G G+V A+ A +  S  K
Sbjct: 95  GGANTMPAPASFMGSLAIVPAAAAPGGGGGQVQAAAAPVASSEKK 139


>02_02_0015 +
           6109552-6109650,6110006-6110078,6111937-6111998,
           6112315-6112376,6112463-6112556,6112673-6113227,
           6113379-6113870,6113967-6114137,6115713-6115817,
           6115903-6116052,6116372-6116498,6116585-6116648,
           6117147-6117203,6117423-6117555,6117660-6117746
          Length = 776

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 12/47 (25%), Positives = 24/47 (51%)

Query: 253 GGANSPPYSPAKGPGKVYASVAEMKRSRAKLWSKCPGTLRREFHSTP 299
           GG+ SPPY+ +    + Y+  ++ + SR     + PG    ++  +P
Sbjct: 147 GGSRSPPYNESYSDRRSYSGRSDDRNSRYSYGERSPGYEHNDYKKSP 193


>04_01_0445 + 5812277-5813893
          Length = 538

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 14/54 (25%), Positives = 28/54 (51%)

Query: 207 PRTASVRQRPASSRITAAELEELFQRQAVADAPGGNNAMMIRSAFQGGANSPPY 260
           P +A++    A+ R   A +  +F  Q   +  GG  A+++ +AF+   ++P Y
Sbjct: 145 PLSATIMSEYANKRTRGAFIAAVFAMQGFGNLTGGIVAIIVSAAFKSRFDAPAY 198


>10_08_0183 - 15522241-15523866
          Length = 541

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 207 PRTASVRQRPASSRITAAELEELFQRQAVADAPGGNNAMMIRSAFQGGANSPPY 260
           P +A++    A+ +   A +  +F  Q      GG   ++I SAF+ G  +P Y
Sbjct: 150 PLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGIVTLIISSAFRAGFPAPAY 203


>10_07_0061 +
           12489552-12489674,12490761-12490836,12490916-12490980,
           12491089-12491166,12492156-12492236,12492813-12492974,
           12493328-12493426,12493509-12494797,12495063-12495286,
           12495373-12495500,12495596-12495634,12495724-12497178
          Length = 1272

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 19/75 (25%), Positives = 31/75 (41%)

Query: 175 EESCEPLSAAGKSSSAESVQQPXXXXXXXXXXPRTASVRQRPASSRITAAELEELFQRQA 234
           ++S + L A    +S    QQP          PR     Q P  S     + EE+ QR+ 
Sbjct: 457 DKSKDTLQAMAPENSVLDQQQPQAPHLSQQAGPRNMQQWQNPRFSGEKDLKKEEMLQRRK 516

Query: 235 VADAPGGNNAMMIRS 249
           +A     ++  M++S
Sbjct: 517 IAATSRVSSVPMVQS 531


>08_02_1613 + 28236989-28238593
          Length = 534

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 13/54 (24%), Positives = 27/54 (50%)

Query: 207 PRTASVRQRPASSRITAAELEELFQRQAVADAPGGNNAMMIRSAFQGGANSPPY 260
           P +A++    A+ +   A +  +F  Q      GG  A+++ ++F+    +PPY
Sbjct: 151 PLSATIMSEYANKKTRGAFIAAVFAMQGFGIITGGLVAILVSASFRAAFPAPPY 204


>02_01_0085 + 610872-611297
          Length = 141

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 257 SPPYSPAKGPGKVYASVAEMKRSRAKLWSKCPGTLRREFHSTPDLAAELAPHPPRTRSTD 316
           +PPY     P K   + AE+       W +  G +R    S P L    AP   R RST 
Sbjct: 7   APPY-----PSKSELAAAEVASCA---WGRSGGRIRHRLASCPQLPITAAPAVTRARSTP 58

Query: 317 D 317
           D
Sbjct: 59  D 59


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.129    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,414,004
Number of Sequences: 37544
Number of extensions: 355785
Number of successful extensions: 1048
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 8
length of query: 433
length of database: 14,793,348
effective HSP length: 84
effective length of query: 349
effective length of database: 11,639,652
effective search space: 4062238548
effective search space used: 4062238548
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)