GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000850-TA|BGIBMGA000850-PA|IPR001478|PDZ/DHR/GLGF
         (433 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical pr...    64   2e-10
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    64   2e-10
Z79754-2|CAB02091.1|  578|Caenorhabditis elegans Hypothetical pr...    41   0.001
Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical pr...    35   0.098
Z48241-8|CAD44101.1|  589|Caenorhabditis elegans Hypothetical pr...    35   0.098
Z48241-7|CAA88287.1| 1026|Caenorhabditis elegans Hypothetical pr...    35   0.098
Z48241-2|CAB54194.1|  624|Caenorhabditis elegans Hypothetical pr...    35   0.098
Z36237-4|CAD44107.1|  589|Caenorhabditis elegans Hypothetical pr...    35   0.098
Z36237-3|CAA85272.1| 1026|Caenorhabditis elegans Hypothetical pr...    35   0.098
Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U49829-8|AAV28348.1|  515|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U49829-7|AAA93388.3|  513|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin pro...    31   1.2  
AF040653-7|AAB95031.1|  532|Caenorhabditis elegans Hypothetical ...    31   2.1  
Z81072-10|CAB03028.1|  423|Caenorhabditis elegans Hypothetical p...    30   3.7  
Z81072-9|CAB03025.1|  440|Caenorhabditis elegans Hypothetical pr...    30   3.7  
Z93386-3|CAB07648.1|  230|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    29   4.9  
AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical ...    29   6.4  
Z81073-2|CAB03034.2|  245|Caenorhabditis elegans Hypothetical pr...    29   8.5  
Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical pr...    29   8.5  
Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical pr...    29   8.5  
U39742-7|AAK39197.2|  967|Caenorhabditis elegans Drosophila disc...    29   8.5  
AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.     29   8.5  
AJ295228-1|CAC35153.1|  967|Caenorhabditis elegans MAGUK protein...    29   8.5  
AF406786-1|AAL01376.1|  967|Caenorhabditis elegans SAP97-like pr...    29   8.5  

>Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical
           protein C33B4.3b protein.
          Length = 993

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 31/84 (36%), Positives = 46/84 (54%)

Query: 4   RTVVLHRARRGFGFVLRGAKASSPLMELRPSERCPALQYXXXXXXXXXXXXXXXXKGDFL 63
           R +V+ R  +GFGF+LRGAK  +  +   P+ + PALQ+                 GD+L
Sbjct: 435 RILVIPRGVKGFGFILRGAKHVAMPLNFEPTAQVPALQFFEGVDMSGMAVRAGLRPGDYL 494

Query: 64  VAINGEDVSAASHEHVVELIRNSG 87
           + I+G DV   SH+ VVE I+ +G
Sbjct: 495 LEIDGIDVRRCSHDEVVEFIQQAG 518



 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 41/107 (38%), Positives = 51/107 (47%), Gaps = 14/107 (13%)

Query: 208 RTASVRQRPASS-RITAAELEELFQRQAVADAPGGNNAMMI-RSAFQGGANSPPYSPA-- 263
           R ASVRQRP S  RI+AAELE L  RQ V    G    M   + +  GG +S  Y+    
Sbjct: 569 RHASVRQRPGSGRRISAAELENLMVRQRVPSVQGSPYQMQYDQESLNGGYSSKKYNSVSD 628

Query: 264 ----KGPGKVYASVAEMKRSRAKLWSKCPGTLRREFH----STPDLA 302
               KG   V AS A + RS  +     P T   E++    STP L+
Sbjct: 629 MKRRKGQRNVVASSAGLNRSTFE--QAAPTTSTFEYNCSSRSTPQLS 673


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
           protein C33B4.3a protein.
          Length = 1110

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 31/84 (36%), Positives = 46/84 (54%)

Query: 4   RTVVLHRARRGFGFVLRGAKASSPLMELRPSERCPALQYXXXXXXXXXXXXXXXXKGDFL 63
           R +V+ R  +GFGF+LRGAK  +  +   P+ + PALQ+                 GD+L
Sbjct: 435 RILVIPRGVKGFGFILRGAKHVAMPLNFEPTAQVPALQFFEGVDMSGMAVRAGLRPGDYL 494

Query: 64  VAINGEDVSAASHEHVVELIRNSG 87
           + I+G DV   SH+ VVE I+ +G
Sbjct: 495 LEIDGIDVRRCSHDEVVEFIQQAG 518



 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 41/107 (38%), Positives = 51/107 (47%), Gaps = 14/107 (13%)

Query: 208 RTASVRQRPASS-RITAAELEELFQRQAVADAPGGNNAMMI-RSAFQGGANSPPYSPA-- 263
           R ASVRQRP S  RI+AAELE L  RQ V    G    M   + +  GG +S  Y+    
Sbjct: 569 RHASVRQRPGSGRRISAAELENLMVRQRVPSVQGSPYQMQYDQESLNGGYSSKKYNSVSD 628

Query: 264 ----KGPGKVYASVAEMKRSRAKLWSKCPGTLRREFH----STPDLA 302
               KG   V AS A + RS  +     P T   E++    STP L+
Sbjct: 629 MKRRKGQRNVVASSAGLNRSTFE--QAAPTTSTFEYNCSSRSTPQLS 673


>Z79754-2|CAB02091.1|  578|Caenorhabditis elegans Hypothetical
           protein F25H2.2 protein.
          Length = 578

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 20/78 (25%), Positives = 36/78 (46%)

Query: 10  RARRGFGFVLRGAKASSPLMELRPSERCPALQYXXXXXXXXXXXXXXXXKGDFLVAINGE 69
           ++  GFGF ++G  +    +     +    LQ+                KGD ++ +NG 
Sbjct: 54  KSETGFGFNVKGQVSEGGQLRSLNGQLYAPLQHVSAVLRRGAADQAGLRKGDRILEVNGL 113

Query: 70  DVSAASHEHVVELIRNSG 87
           +V  ++H  VV+LI+N G
Sbjct: 114 NVEGSTHRKVVDLIKNGG 131


>Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical protein
            K01A6.2 protein.
          Length = 1092

 Score = 35.1 bits (77), Expect = 0.098
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 6    VVLHRARRGFGFVLRGAK--ASSPLMELRPSERCPALQYXXXXXXXXXXXXXXXXKGDFL 63
            V L R  +GFGF +RG +   S PL  LR ++  PA                    GD L
Sbjct: 1009 VTLERGTKGFGFSIRGGQEFGSMPLFVLRIADDGPA------------KADGRLQVGDQL 1056

Query: 64   VAINGEDVSAASHEHVVELIR 84
              ING+     SH+  + +I+
Sbjct: 1057 TTINGQSTKGMSHDDAIRIIK 1077



 Score = 33.5 bits (73), Expect = 0.30
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 17/85 (20%)

Query: 6   VVLHRARR-GFGFVLRGA--KASSPLMELRPSERCPALQYXXXXXXXXXXXXXXXXKGDF 62
           V+LHR    GFGFVL  +  K  S + +++P    PA +                  GD 
Sbjct: 862 VLLHRNENDGFGFVLMSSQHKNGSTVGQIQPGS--PAARCGRLSV------------GDR 907

Query: 63  LVAINGEDVSAASHEHVVELIRNSG 87
           ++A+NG D+ + SH   + LI++SG
Sbjct: 908 VIAVNGIDILSLSHPDTISLIKDSG 932


>Z48241-8|CAD44101.1|  589|Caenorhabditis elegans Hypothetical
           protein C48D5.2c protein.
          Length = 589

 Score = 35.1 bits (77), Expect = 0.098
 Identities = 14/28 (50%), Positives = 22/28 (78%)

Query: 59  KGDFLVAINGEDVSAASHEHVVELIRNS 86
           +GD ++ I+G DVS  SH+HVV+ IR++
Sbjct: 225 EGDQVLFIDGRDVSTMSHDHVVQFIRSA 252


>Z48241-7|CAA88287.1| 1026|Caenorhabditis elegans Hypothetical
           protein C48D5.2a protein.
          Length = 1026

 Score = 35.1 bits (77), Expect = 0.098
 Identities = 14/28 (50%), Positives = 22/28 (78%)

Query: 59  KGDFLVAINGEDVSAASHEHVVELIRNS 86
           +GD ++ I+G DVS  SH+HVV+ IR++
Sbjct: 662 EGDQVLFIDGRDVSTMSHDHVVQFIRSA 689


>Z48241-2|CAB54194.1|  624|Caenorhabditis elegans Hypothetical
           protein C48D5.2b protein.
          Length = 624

 Score = 35.1 bits (77), Expect = 0.098
 Identities = 14/28 (50%), Positives = 22/28 (78%)

Query: 59  KGDFLVAINGEDVSAASHEHVVELIRNS 86
           +GD ++ I+G DVS  SH+HVV+ IR++
Sbjct: 260 EGDQVLFIDGRDVSTMSHDHVVQFIRSA 287


>Z36237-4|CAD44107.1|  589|Caenorhabditis elegans Hypothetical
           protein C48D5.2c protein.
          Length = 589

 Score = 35.1 bits (77), Expect = 0.098
 Identities = 14/28 (50%), Positives = 22/28 (78%)

Query: 59  KGDFLVAINGEDVSAASHEHVVELIRNS 86
           +GD ++ I+G DVS  SH+HVV+ IR++
Sbjct: 225 EGDQVLFIDGRDVSTMSHDHVVQFIRSA 252


>Z36237-3|CAA85272.1| 1026|Caenorhabditis elegans Hypothetical
           protein C48D5.2a protein.
          Length = 1026

 Score = 35.1 bits (77), Expect = 0.098
 Identities = 14/28 (50%), Positives = 22/28 (78%)

Query: 59  KGDFLVAINGEDVSAASHEHVVELIRNS 86
           +GD ++ I+G DVS  SH+HVV+ IR++
Sbjct: 662 EGDQVLFIDGRDVSTMSHDHVVQFIRSA 689


>Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical
           protein F33A8.1 protein.
          Length = 897

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 34/146 (23%), Positives = 53/146 (36%), Gaps = 7/146 (4%)

Query: 174 KEESCEPLSAAGKSSSAESVQQPXXXXXXXXXXPRTASVRQRPASSRITAAELEELFQRQ 233
           + +S E   AA +    E  +             ++AS  Q P  SR  + E E    ++
Sbjct: 5   RSQSPETPKAASEEREEEEKESSEQPDTPKTSSEKSASRSQSPRESREVSQETETSENQE 64

Query: 234 AVA------DAPGGNNAMMIRSAFQGGANSPPYSPAKGPGKVYASVAEMKRSRAKLWSKC 287
            +       D PG  N+   R        S     ++ P K        +RS A+  S+ 
Sbjct: 65  KIKEKDDGDDQPGTPNSYRSRETSPAPKRSKETRESESPEKSPVRSRSPRRSSARSPSRS 124

Query: 288 PGTLRREFHSTPDLAAELAPHPPRTR 313
           P   RRE  S    + E AP P + +
Sbjct: 125 P-RRRRERSSERKQSEEPAPLPEKKK 149


>U49829-8|AAV28348.1|  515|Caenorhabditis elegans Hypothetical
           protein F27D9.8b protein.
          Length = 515

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 60  GDFLVAINGEDVSAASHEHVVELIRNSG 87
           GD +V +NG  +   SH+ VV ++++SG
Sbjct: 112 GDAIVEVNGISIEGQSHDEVVNMLKSSG 139


>U49829-7|AAA93388.3|  513|Caenorhabditis elegans Hypothetical
           protein F27D9.8a protein.
          Length = 513

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 60  GDFLVAINGEDVSAASHEHVVELIRNSG 87
           GD +V +NG  +   SH+ VV ++++SG
Sbjct: 112 GDAIVEVNGISIEGQSHDEVVNMLKSSG 139


>U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin
           protein.
          Length = 897

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 34/146 (23%), Positives = 53/146 (36%), Gaps = 7/146 (4%)

Query: 174 KEESCEPLSAAGKSSSAESVQQPXXXXXXXXXXPRTASVRQRPASSRITAAELEELFQRQ 233
           + +S E   AA +    E  +             ++AS  Q P  SR  + E E    ++
Sbjct: 5   RSQSPETPKAASEEREEEEKESSEQPDTPKTSSEKSASRSQSPRESREVSQETETSENQE 64

Query: 234 AVA------DAPGGNNAMMIRSAFQGGANSPPYSPAKGPGKVYASVAEMKRSRAKLWSKC 287
            +       D PG  N+   R        S     ++ P K        +RS A+  S+ 
Sbjct: 65  KIKEKDDGDDQPGTPNSYRSRETSPAPKRSKETRESESPEKSPVRSRSPRRSSARSPSRS 124

Query: 288 PGTLRREFHSTPDLAAELAPHPPRTR 313
           P   RRE  S    + E AP P + +
Sbjct: 125 P-RRRRERSSERKQSEEPAPLPEKKK 149


>AF040653-7|AAB95031.1|  532|Caenorhabditis elegans Hypothetical
           protein K05F6.2 protein.
          Length = 532

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 225 ELEELFQRQAVADAPGGNNAMMIRSAFQGGANSPPYS-PAKGPGKVYASVAEMKRSRAKL 283
           ELE+   R+        +++ +I S     ++ P  + P K   KV+ +++E ++ R  +
Sbjct: 280 ELEQFRVRKGDLSLLPSSHSALIPSPTMAASSFPLLNLPKKNLKKVFCNMSENEQVRISM 339

Query: 284 WSKCPGTLRREFHSTPDLAAELA 306
            SK    L REFH   ++   LA
Sbjct: 340 VSKKTKELVREFHILKNIRPRLA 362


>Z81072-10|CAB03028.1|  423|Caenorhabditis elegans Hypothetical
           protein F30A10.8b protein.
          Length = 423

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 10/27 (37%), Positives = 19/27 (70%)

Query: 61  DFLVAINGEDVSAASHEHVVELIRNSG 87
           D ++++NGE++  ASHE  V  ++ +G
Sbjct: 91  DVIISVNGENLLDASHEEAVRALKRAG 117


>Z81072-9|CAB03025.1|  440|Caenorhabditis elegans Hypothetical
           protein F30A10.8a protein.
          Length = 440

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 10/27 (37%), Positives = 19/27 (70%)

Query: 61  DFLVAINGEDVSAASHEHVVELIRNSG 87
           D ++++NGE++  ASHE  V  ++ +G
Sbjct: 91  DVIISVNGENLLDASHEEAVRALKRAG 117


>Z93386-3|CAB07648.1|  230|Caenorhabditis elegans Hypothetical
           protein R11H6.4 protein.
          Length = 230

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 3/95 (3%)

Query: 169 ENGGEKEESCEPLSAAGKSSSAESVQQPXXXXXXXXXXPRTASVRQRPASSRITAAELEE 228
           E   E E+S +P S++GK    +    P           R    R   +  +   AEL  
Sbjct: 110 EKSSEPEQSSDPRSSSGKEDGDDF---PTTPNIAAKIAQRRLPRRTPTSHVKGVTAELMR 166

Query: 229 LFQRQAVADAPGGNNAMMIRSAFQGGANSPPYSPA 263
               +   + PGGNN +  R  F+   +     P+
Sbjct: 167 RRLSKTSEEEPGGNNNITSRFTFKTSIDESKEEPS 201


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 182 SAAGKSSSAESVQQPXXXXXXXXXXPRTASVRQRPASSRITAAELEELFQRQA 234
           SAAG S SA S  QP          P T+S    P  +   A+    L +RQ+
Sbjct: 211 SAAGSSISAPSTSQPSTTSSLITSPPSTSSSSMAPRKTPPNASS-SSLIKRQS 262


>AF099918-1|AAK29840.2|  820|Caenorhabditis elegans Hypothetical
           protein H05C05.1a protein.
          Length = 820

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 17/70 (24%), Positives = 29/70 (41%)

Query: 174 KEESCEPLSAAGKSSSAESVQQPXXXXXXXXXXPRTASVRQRPASSRITAAELEELFQRQ 233
           KE   +  SA+G +++A +  QP                 Q  +S+    A+ E+  Q++
Sbjct: 741 KEPPTQSASASGAAAAAAASAQPSESSSATAASGDNGDSAQNSSSTPKKNAKKEKKKQKR 800

Query: 234 AVADAPGGNN 243
                P GNN
Sbjct: 801 EARQTPLGNN 810


>Z81073-2|CAB03034.2|  245|Caenorhabditis elegans Hypothetical
           protein F30F8.3 protein.
          Length = 245

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 59  KGDFLVAINGEDVSAASHEHVVELI 83
           +GD ++A+N + V  ASH  +VE I
Sbjct: 108 RGDMVIAVNEKSVVTASHAEIVESI 132


>Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 11/27 (40%), Positives = 19/27 (70%)

Query: 59  KGDFLVAINGEDVSAASHEHVVELIRN 85
           +GD +V +NG  VS  +H+ V+++I N
Sbjct: 90  QGDRIVKVNGMSVSPNNHKEVLQMISN 116


>Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 11/27 (40%), Positives = 19/27 (70%)

Query: 59  KGDFLVAINGEDVSAASHEHVVELIRN 85
           +GD +V +NG  VS  +H+ V+++I N
Sbjct: 90  QGDRIVKVNGMSVSPNNHKEVLQMISN 116


>U39742-7|AAK39197.2|  967|Caenorhabditis elegans Drosophila discs
           large homologprotein 1, isoform a protein.
          Length = 967

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 60  GDFLVAINGEDVSAASHEHVVELIRNSG 87
           GD L+ +NG  +  A+H+   E +RN+G
Sbjct: 553 GDVLLEVNGVVLRNATHKEAAEALRNAG 580


>AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF
          protein.
          Length = 1293

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 11/27 (40%), Positives = 19/27 (70%)

Query: 59 KGDFLVAINGEDVSAASHEHVVELIRN 85
          +GD +V +NG  VS  +H+ V+++I N
Sbjct: 43 QGDRIVKVNGMSVSPNNHKEVLQMISN 69


>AJ295228-1|CAC35153.1|  967|Caenorhabditis elegans MAGUK protein
           DLG-1 protein.
          Length = 967

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 60  GDFLVAINGEDVSAASHEHVVELIRNSG 87
           GD L+ +NG  +  A+H+   E +RN+G
Sbjct: 553 GDVLLEVNGVVLRNATHKEAAEALRNAG 580


>AF406786-1|AAL01376.1|  967|Caenorhabditis elegans SAP97-like
           protein DLG-1 protein.
          Length = 967

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 60  GDFLVAINGEDVSAASHEHVVELIRNSG 87
           GD L+ +NG  +  A+H+   E +RN+G
Sbjct: 553 GDVLLEVNGVVLRNATHKEAAEALRNAG 580


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.129    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,826,695
Number of Sequences: 27539
Number of extensions: 246882
Number of successful extensions: 621
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 584
Number of HSP's gapped (non-prelim): 41
length of query: 433
length of database: 12,573,161
effective HSP length: 83
effective length of query: 350
effective length of database: 10,287,424
effective search space: 3600598400
effective search space used: 3600598400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)