GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000850-TA|BGIBMGA000850-PA|IPR001478|PDZ/DHR/GLGF
         (433 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein ...    34   0.16 
At2g38940.1 68415.m04785 phosphate transporter (PT2) identical t...    29   4.6  
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    29   6.0  

>At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 393

 Score = 34.3 bits (75), Expect = 0.16
 Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 1/106 (0%)

Query: 212 VRQRPASSRITAAELEELFQRQAVADAPGGNNAMMIRSAFQGGANSPPYSPAKGPGKVYA 271
           +R R AS+   AA    +  +  +++     ++M +  A Q  ++SP  +P       +A
Sbjct: 248 LRNRAASAVSAAAAAGSMNYKDVLSELVNSLDSMSLAEALQASSSSPVTTPVSAAAAAFA 307

Query: 272 SVAEMKRSRAKLWSKCPGTLRREFHSTPDLAAELAPHPPRTRSTDD 317
           S   +   R  L  + P +   +F  +P   + L   P     +DD
Sbjct: 308 SSCGLSNQRLHLQQQQPSS-PLQFALSPSTPSYLTNSPQANFFSDD 352


>At2g38940.1 68415.m04785 phosphate transporter (PT2) identical to
           phosphate transporter (AtPT2) [Arabidopsis thaliana]
           GI:1502430
          Length = 534

 Score = 29.5 bits (63), Expect = 4.6
 Identities = 16/55 (29%), Positives = 27/55 (49%)

Query: 207 PRTASVRQRPASSRITAAELEELFQRQAVADAPGGNNAMMIRSAFQGGANSPPYS 261
           P +A++    A+ +   A +  +F  Q      GG  A++I SAF+    SP Y+
Sbjct: 146 PLSATIMSEYANKKTRGAFVSAVFAMQGFGIMAGGIFAIIISSAFEAKFPSPAYA 200


>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 230 FQRQAVADAPG--GNNAMMIRSAFQGGANSPPYSPAKGPGKVYASVAEMKRSRAKLWSKC 287
           ++R++ + +PG    N    RS  +  + SPPY   + P   ++      RSR+K +SK 
Sbjct: 738 YRRRSRSVSPGLCYRNRRYSRSPIR--SRSPPYRKRRSPSASHSLSPSRSRSRSKSYSKS 795

Query: 288 P 288
           P
Sbjct: 796 P 796


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.129    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,650,420
Number of Sequences: 28952
Number of extensions: 236082
Number of successful extensions: 520
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 517
Number of HSP's gapped (non-prelim): 3
length of query: 433
length of database: 12,070,560
effective HSP length: 83
effective length of query: 350
effective length of database: 9,667,544
effective search space: 3383640400
effective search space used: 3383640400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)