Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000849-TA|BGIBMGA000849-PA|IPR002110|Ankyrin,
IPR001452|Src homology-3, IPR011511|Variant SH3
         (523 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    26   0.56 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   9.1  

>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 26.2 bits (55), Expect = 0.56
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query: 453 DDGLLEGCVRGSGAAGLFPAHCVQEVRLRQNNVHLHQVLASGPIHHSRV 501
           DDG+  G + G   AGL+  H      L+  +   H   A  P H + V
Sbjct: 9   DDGIHPGYMDGGAGAGLYEPHVAHRPGLQGLHHSPHLNHAMHPYHANHV 57


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 410 NSDTTTCSLQPSSTAVCLQPYEGAAPGH 437
           N D       P+ T+V  + Y    PGH
Sbjct: 303 NDDAFNSVATPTPTSVMTELYPSPVPGH 330


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.134    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,901
Number of Sequences: 317
Number of extensions: 4629
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 2
length of query: 523
length of database: 114,650
effective HSP length: 60
effective length of query: 463
effective length of database: 95,630
effective search space: 44276690
effective search space used: 44276690
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)