GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000847-TA|BGIBMGA000847-PA|undefined
         (104 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   2.6  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     20   5.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    20   5.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           20   5.9  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 77  RKPSDESEVDDRKKRCIDRYDSSESSD 103
           R+P DE + D       D + SS SSD
Sbjct: 45  REPMDEDKNDSGVTSGSDFHSSSPSSD 71


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 60  SDRHGVAEDGTTVVTDYRKPSDESEVDDRK 89
           SD     +DG    T+  +  D+ E  DR+
Sbjct: 180 SDEQDDGDDGQGSSTNNDEDDDDEETGDRQ 209


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 60  SDRHGVAEDGTTVVTDYRKPSDESEVDDRK 89
           SD     +DG    T+  +  D+ E  DR+
Sbjct: 180 SDEQDDGDDGQGSSTNNDEDDDDEETGDRQ 209


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 60  SDRHGVAEDGTTVVTDYRKPSDESEVDDRK 89
           SD     +DG    T+  +  D+ E  DR+
Sbjct: 180 SDEQDDGDDGQGSSTNNDEDDDDEETGDRQ 209


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.309    0.126    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,479
Number of Sequences: 317
Number of extensions: 817
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 104
length of database: 114,650
effective HSP length: 49
effective length of query: 55
effective length of database: 99,117
effective search space:  5451435
effective search space used:  5451435
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (19.9 bits)
S2: 38 (19.4 bits)