Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000847-TA|BGIBMGA000847-PA|undefined
(104 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 31 0.037
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 30 0.086
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 28 0.35
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 0.60
SPAC22H12.01c |mug35|SPAC23G3.13c|sequence orphan|Schizosaccharo... 26 1.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 1.4
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 25 2.4
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 25 2.4
SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces ... 25 3.2
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 24 4.3
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 24 5.6
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 24 5.6
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 24 5.6
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 24 5.6
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 23 7.4
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 23 7.4
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 23 7.4
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 23 7.4
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 23 7.4
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 23 9.8
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 23 9.8
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 23 9.8
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 23 9.8
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 23 9.8
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch... 23 9.8
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 31.1 bits (67), Expect = 0.037
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 26 GHRDSKKCSDIVFDDESVKLSYFKKRKTSESCDKSDRHGVAEDGTTVVTDYRKPSDESEV 85
G DS S ++ + S KK+ S S ++S A + ++ S+ESEV
Sbjct: 8 GSSDSDAESVDSSEENRLTSSRLKKQDDSSSEEESSEEESASSSESESSEEESESEESEV 67
Query: 86 DDRKKRCIDRYDSSES 101
+ KK+ + + SES
Sbjct: 68 EVPKKKAVAASEDSES 83
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 29.9 bits (64), Expect = 0.086
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 25 KGHRDSKKCSDIVFD--DESVKLSYFKKRKTS--ESCDKSDRHGVAEDGTTVVTDYRKPS 80
+ H K + I +D DE ++LS F TS + K D V EDG++ D+ S
Sbjct: 275 RAHMQQKGHTSIAYDTEDEQLELSDFYDFTTSYPDYAVKQDETVVEEDGSSGEGDWEDVS 334
Query: 81 DESE 84
D+S+
Sbjct: 335 DDSD 338
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 27.9 bits (59), Expect = 0.35
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 51 RKTSESCDKSDRHGVAEDGTTVVTDYRKPSDESEVDDRKKRCIDRYDSSESSDR 104
+++ E D S+ H ++E ++ + SDE ++ RK+R + + S SS +
Sbjct: 28 KESDEESDSSENHPLSE---SLNKKSKSESDEDDIPIRKRRASSKKNMSNSSSK 78
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 27.1 bits (57), Expect = 0.60
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 35 DIVFDDESVKLSYFKKRKTSESCDKSDRHGVAEDG--TTVVTDYRKPSDESEVDDRKKR 91
D+ D+E + S K+K +S K D +DG + D +K E DD K+
Sbjct: 135 DLSLDEEESESSEKSKKKKKKSKSKDDGSEALDDGDIESSEKDKKKKKKSKENDDAPKK 193
Score = 23.0 bits (47), Expect = 9.8
Identities = 13/65 (20%), Positives = 30/65 (46%)
Query: 39 DDESVKLSYFKKRKTSESCDKSDRHGVAEDGTTVVTDYRKPSDESEVDDRKKRCIDRYDS 98
+++S K K+ + ++ K+ +A+D + D + + +KK+ + D
Sbjct: 103 EEDSEKPVRKNKKSSKKASPKNAFDALADDMDDLSLDEEESESSEKSKKKKKKSKSKDDG 162
Query: 99 SESSD 103
SE+ D
Sbjct: 163 SEALD 167
>SPAC22H12.01c |mug35|SPAC23G3.13c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 25.8 bits (54), Expect = 1.4
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 58 DKSDRHGVAEDGTTVVTDYRKPSDESEVDDRKKRCIDRYDSSESSDR 104
DK+ + + D + +T K D S V +K DRYD + S++
Sbjct: 116 DKTQKQLLRRDSSGDLTSTDKERDVSPVSHSEKPYWDRYDLDQPSNQ 162
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 1.4
Identities = 17/80 (21%), Positives = 32/80 (40%)
Query: 10 AGLKQMNNLTFTATDKGHRDSKKCSDIVFDDESVKLSYFKKRKTSESCDKSDRHGVAEDG 69
A L+ N + ++ K S + +SYF+K+ T+ + S + A D
Sbjct: 147 AALEHENGILSLQLSSSNKKDKNTSSVTTLTSEEDVSYFQKKLTNMESNFSAKQSEAYDL 206
Query: 70 TTVVTDYRKPSDESEVDDRK 89
+ + + D+ E D K
Sbjct: 207 SRQLLTVTEKLDKKEKDYEK 226
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.0 bits (52), Expect = 2.4
Identities = 19/75 (25%), Positives = 28/75 (37%)
Query: 29 DSKKCSDIVFDDESVKLSYFKKRKTSESCDKSDRHGVAEDGTTVVTDYRKPSDESEVDDR 88
DS+ S D S S + +S+ D S +ED ++ + + SE D
Sbjct: 242 DSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDS 301
Query: 89 KKRCIDRYDSSESSD 103
D SS S D
Sbjct: 302 TSSSSDSDSSSSSED 316
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 25.0 bits (52), Expect = 2.4
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 38 FDDESVKLS-YFKKRKTSESCDKSDRHGVAEDGTTVVTDYRKPSDESEVDDRKKRCID 94
F D +V+ S ++R TSES S G A +G + R PS ++ + + I+
Sbjct: 503 FKDYTVENSPASRERSTSESAQSSVHMGYAGEGGLLSGALRAPSQQNNNNSNTQHSIN 560
>SPBC3E7.13c |||splicing factor, SYF2 family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 24.6 bits (51), Expect = 3.2
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 49 KKRKTSESCDKSDRHGVAEDGTT-----VVTDYRKPSDESEVDDRKKRCIDRYDSSESSD 103
KK++T ++ SD H A + DY K + + + K R + YD +E D
Sbjct: 95 KKKQTIQNVAFSDYHSQASKDYNRGIRDLKPDYEKYDKDKKEEKSKSRSVALYDEAERLD 154
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 24.2 bits (50), Expect = 4.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 67 EDGTTVVTDYRKPSDESEVDDRKKRCIDRYDS 98
EDGT +++Y K + V +RK+ DR S
Sbjct: 475 EDGTHKISEYTKEKLGTRVYNRKRIVSDRIPS 506
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 23.8 bits (49), Expect = 5.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 42 SVKLSYFKKRKTSESCDKSDRHGVAEDGTTVVTDY 76
S+ L YFKK++ S S K + + V + + ++ Y
Sbjct: 117 SILLPYFKKKELSISEHKINPNNVIHNSSRILGQY 151
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 23.8 bits (49), Expect = 5.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 28 RDSKKCSDIVFDDESVKLSYFKKRKTSESCDKSD 61
RD K D+V + S + +FK+ ++S++ K D
Sbjct: 99 RDMKLVMDLVLNHTSDQHEWFKESRSSKTNPKRD 132
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 23.8 bits (49), Expect = 5.6
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 30 SKKCSDIVFDDESVKLSYFKKRKTSES---CDKS---DRHGVAEDGTTVVTDYRKPSD 81
SK +VF + + Y K+ K S+ C D+H +DG V+T +++ D
Sbjct: 598 SKLNDFVVFFNNYSRFEYEKESKRSDIVCICTNDANVDKHKFLQDGNIVITFFQQDED 655
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 23.8 bits (49), Expect = 5.6
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 35 DIVFDDESVKLSYF 48
DI+F D S++L YF
Sbjct: 67 DIIFHDRSIQLGYF 80
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 23.4 bits (48), Expect = 7.4
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 61 DRHGVAEDGTTVVTDYRKPSDESEV 85
D G+ GT TDY KP +V
Sbjct: 129 DASGLVSPGTIFTTDYFKPKQYVDV 153
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 23.4 bits (48), Expect = 7.4
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 59 KSDRHGVAEDGTTVVTDYRKPSDESEVDDRKKR-CIDRYDSSES 101
+ + +ED ++ D K S + + DRKKR + +SS+S
Sbjct: 918 RKSQQKASEDDMSLSDDEEKQSGKKKKKDRKKRKSKSKQESSDS 961
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 23.4 bits (48), Expect = 7.4
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 18 LTFTATDKGHRDSKKCSDIVFDDESVKLSYFKKRKTSESCDKSDRHGVAEDGTTVVTDYR 77
L F + D+ + D + D+S++ S ++ ++SES D ED + R
Sbjct: 211 LEFVSDDEDEEEISDLEDWLGSDQSMETSESEEEESSESESDEDED---EDNKGKI---R 264
Query: 78 KPSDESEVDDRKKR 91
K + RKKR
Sbjct: 265 KRKTDDAKKSRKKR 278
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 23.4 bits (48), Expect = 7.4
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 57 CDKSDRHGVAEDGTTVVTDYRKPSDESEVDDR 88
CD +EDGT V D R PS + D +
Sbjct: 93 CDGKWLATSSEDGTVKVWDMRAPSVQRNYDHK 124
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 23.4 bits (48), Expect = 7.4
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 58 DKSDRHGVAEDGTTVVTDYRKPSDESEVDD 87
D+S + GV + T + D P +E+DD
Sbjct: 931 DRSAQDGVVQQATPHIQDEFPPIQFNEIDD 960
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 23.0 bits (47), Expect = 9.8
Identities = 19/88 (21%), Positives = 36/88 (40%)
Query: 14 QMNNLTFTATDKGHRDSKKCSDIVFDDESVKLSYFKKRKTSESCDKSDRHGVAEDGTTVV 73
++++ TF+ DK + S + I+ ++ S+ + R+TS DK + A +V
Sbjct: 656 KLSDGTFSTPDKENVQSTNDAHIMQENFSLHKALEVMRETSSDLDKQLKDATASQKELIV 715
Query: 74 TDYRKPSDESEVDDRKKRCIDRYDSSES 101
+ E +R R ES
Sbjct: 716 QTSSFQKELVEERERHNAISKRLQEIES 743
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 23.0 bits (47), Expect = 9.8
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 55 ESCDKSDRHGVAEDGTTVVTDYRKPSDESEVDDRKKRCIDRYDSSE 100
+S D+ DR + D ++ +DY K ES+V R K+ D E
Sbjct: 447 DSDDERDR--LEADLDSMYSDYTKRKAESDVKYRVKKARGDLDDEE 490
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 23.0 bits (47), Expect = 9.8
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 40 DESVKLSYFKKRKTSESCDKSDRHGVAEDGTTVVTDYRKPSDESEVDDRKKRCIDRYDSS 99
+ +V LS +SES ++S V E ++ D D SE DR++ R+ +
Sbjct: 1054 ENNVPLSEDDLSNSSESSNESVYSLVEESDASLAADNMDIEDISEESDREELSSMRFGAQ 1113
Query: 100 E 100
+
Sbjct: 1114 D 1114
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 23.0 bits (47), Expect = 9.8
Identities = 11/64 (17%), Positives = 28/64 (43%)
Query: 24 DKGHRDSKKCSDIVFDDESVKLSYFKKRKTSESCDKSDRHGVAEDGTTVVTDYRKPSDES 83
++ ++ + + E+ + + + TS++C+ S+ D V +Y PS
Sbjct: 121 NQSRKNQMSNNSTTYHRETKRRNINAEASTSDNCNNSNTSVDPMDEYLVTAEYTMPSTSE 180
Query: 84 EVDD 87
+ +D
Sbjct: 181 QSED 184
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 23.0 bits (47), Expect = 9.8
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 83 SEVDDRKKRCIDRYDSS 99
S+VD+RKK ID +D++
Sbjct: 114 SDVDNRKKAKIDAHDTT 130
>SPAC1486.06 |||nicotinate phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 410
Score = 23.0 bits (47), Expect = 9.8
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 52 KTSESCDKSDRHGVAEDGTTVVTDYRKPSDESEV 85
K E C G+ GT + +D++K S+ SEV
Sbjct: 333 KYCEKCGIKSAFGI---GTNLTSDFQKVSNPSEV 363
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.126 0.354
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 496,845
Number of Sequences: 5004
Number of extensions: 18884
Number of successful extensions: 60
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 27
length of query: 104
length of database: 2,362,478
effective HSP length: 63
effective length of query: 41
effective length of database: 2,047,226
effective search space: 83936266
effective search space used: 83936266
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 47 (23.0 bits)
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