GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000847-TA|BGIBMGA000847-PA|undefined
         (104 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    22   1.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   2.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   2.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   4.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   4.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   5.4  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    20   7.2  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    20   7.2  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    20   7.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   9.5  

>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
          protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 65 VAEDGTTVVTDYRKPSDESEVDDRKK 90
          +AE+   V+ D R P+   E+  ++K
Sbjct: 17 IAEESDNVLFDKRAPTGHQEMQGKEK 42


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 62  RHGVAEDGTTVVTDYRKPSD 81
           R  V  DGT V+T  +K  D
Sbjct: 564 RQKVLPDGTLVITSVQKKGD 583


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 62  RHGVAEDGTTVVTDYRKPSD 81
           R  V  DGT V+T  +K  D
Sbjct: 564 RQKVLPDGTLVITSVQKKGD 583


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 72  VVTDYRKPSDESEVDDRKKRCIDR 95
           V+  Y  PS  S+ D R +  ID+
Sbjct: 354 VMRRYNTPSKRSDYDSRPQYQIDK 377


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 41  ESVKLSYFKKRKTSESCDKSDRHGV 65
           E +K SY + R  S  C+   R G+
Sbjct: 105 EYLKFSYPRMRAPSFICENETRQGL 129



 Score = 19.8 bits (39), Expect = 7.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 49  KKRKTSESCDKSDRHGVAEDGTTV 72
           +KR+ SE C+K   +  A   T +
Sbjct: 775 EKREKSEHCEKGKEYYAASFHTDI 798


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 76  YRKPSDESEVDDRKKRCIDRYDSSESSD 103
           Y++P    E      R  DRY   ES++
Sbjct: 159 YKRPRTTFEPRATDSRHYDRYKEEESNE 186


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
          protein.
          Length = 339

 Score = 19.8 bits (39), Expect = 7.2
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 65 VAEDGTTVVTDYRKPSDESEVDDRK 89
          +AE+   V+ D R P+   E+  ++
Sbjct: 17 IAEESDNVLFDKRAPTGHQEMQGKQ 41


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
          protein.
          Length = 215

 Score = 19.8 bits (39), Expect = 7.2
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 65 VAEDGTTVVTDYRKPSDESEVDDRK 89
          +AE+   V+ D R P+   E+  ++
Sbjct: 17 IAEESDNVLFDKRAPTGHQEMQGKQ 41


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
          protein.
          Length = 301

 Score = 19.8 bits (39), Expect = 7.2
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 65 VAEDGTTVVTDYRKPSDESEVDDRK 89
          +AE+   V+ D R P+   E+  ++
Sbjct: 17 IAEESDNVLFDKRAPTGHQEMQGKQ 41


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.4 bits (38), Expect = 9.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 24  DKGHRDSKKCSD 35
           DK   DSK+CS+
Sbjct: 197 DKNDPDSKECSN 208


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.126    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,321
Number of Sequences: 429
Number of extensions: 1178
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 104
length of database: 140,377
effective HSP length: 49
effective length of query: 55
effective length of database: 119,356
effective search space:  6564580
effective search space used:  6564580
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (19.9 bits)
S2: 38 (19.4 bits)