Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000847-TA|BGIBMGA000847-PA|undefined
(104 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g03970.3 68416.m00418 expressed protein 31 0.11
At3g03970.2 68416.m00417 expressed protein 31 0.11
At3g03970.1 68416.m00416 expressed protein 31 0.11
At1g04210.1 68414.m00411 leucine-rich repeat family protein / pr... 31 0.11
At3g17850.1 68416.m02275 protein kinase, putative similar to IRE... 31 0.19
At2g31210.1 68415.m03811 basic helix-loop-helix (bHLH) family pr... 30 0.34
At1g22000.1 68414.m02752 F-box family protein contains F-box dom... 29 0.45
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 29 0.59
At5g07710.1 68418.m00884 exonuclease family protein contains exo... 28 1.0
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 28 1.4
At3g19240.1 68416.m02441 expressed protein 27 1.8
At4g38910.1 68417.m05514 expressed protein 27 2.4
At2g27440.1 68415.m03316 rac GTPase activating protein, putative... 27 2.4
At5g52950.1 68418.m06570 expressed protein ; expression supporte... 27 3.1
At5g15140.1 68418.m01774 aldose 1-epimerase family protein simil... 27 3.1
At4g31880.1 68417.m04531 expressed protein 27 3.1
At1g23380.2 68414.m02924 homeobox transcription factor (KNAT6) n... 27 3.1
At1g23380.1 68414.m02925 homeobox transcription factor (KNAT6) n... 27 3.1
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 26 4.2
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 26 4.2
At5g42740.1 68418.m05205 glucose-6-phosphate isomerase, cytosoli... 26 4.2
At4g26630.1 68417.m03837 expressed protein 26 5.5
At2g22795.1 68415.m02704 expressed protein 26 5.5
At1g65890.1 68414.m07477 acyl-activating enzyme 12 (AAE12) simil... 26 5.5
At1g21530.1 68414.m02693 AMP-binding protein, putative strong si... 26 5.5
At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 25 7.3
At5g01980.1 68418.m00117 zinc finger (C3HC4-type RING finger) fa... 25 7.3
At3g56720.1 68416.m06309 expressed protein 25 7.3
At1g77590.1 68414.m09034 long-chain-fatty-acid--CoA ligase famil... 25 7.3
At5g53930.1 68418.m06710 expressed protein 25 9.6
At5g35160.1 68418.m04167 endomembrane protein 70, putative p76, ... 25 9.6
At2g44250.1 68415.m05506 expressed protein contains Pfam profi... 25 9.6
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 25 9.6
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 25 9.6
>At3g03970.3 68416.m00418 expressed protein
Length = 554
Score = 31.5 bits (68), Expect = 0.11
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 49 KKRKTSESCDKSDRHGVAEDGTTVVTDYRK 78
KKR++ + C K RHG A+D T + D R+
Sbjct: 429 KKRQSGDICSKHHRHGFAQDPFTELLDNRQ 458
>At3g03970.2 68416.m00417 expressed protein
Length = 554
Score = 31.5 bits (68), Expect = 0.11
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 49 KKRKTSESCDKSDRHGVAEDGTTVVTDYRK 78
KKR++ + C K RHG A+D T + D R+
Sbjct: 429 KKRQSGDICSKHHRHGFAQDPFTELLDNRQ 458
>At3g03970.1 68416.m00416 expressed protein
Length = 554
Score = 31.5 bits (68), Expect = 0.11
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 49 KKRKTSESCDKSDRHGVAEDGTTVVTDYRK 78
KKR++ + C K RHG A+D T + D R+
Sbjct: 429 KKRQSGDICSKHHRHGFAQDPFTELLDNRQ 458
>At1g04210.1 68414.m00411 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 1112
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 29 DSKKCSDIVFDD-ESVKLSYFKKRKTSESCDKSDRHGVAEDGTTVVTDYRKPSDESEVDD 87
+S +D+V D+ + V+ +R ESC+ + D V DY S+ + ++
Sbjct: 417 ESSLKADVVSDNSQCVETQLTSERDNYESCEIKTSSPSSGDAPGTV-DYNSSSERKKPNN 475
Query: 88 RKKRCIDRY 96
+ KRC ++Y
Sbjct: 476 KSKRCSEKY 484
>At3g17850.1 68416.m02275 protein kinase, putative similar to IRE
(incomplete root hair elongation) [Arabidopsis thaliana]
gi|6729346|dbj|BAA89783; contains protein kinase domain
Pfam:PF00069
Length = 1296
Score = 30.7 bits (66), Expect = 0.19
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 27 HRDSKKCSDIVFDDESVKLSYFKKRKTSESCDKSDRHGVAEDGTTVV--TDYRKPSDESE 84
HRD K + ++ D +KL+ F K D G A GT+++ + R + E +
Sbjct: 1003 HRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLAGPAVSGTSLLDEEESRLAASEEQ 1062
Query: 85 VDDRKKR 91
++ RKKR
Sbjct: 1063 LERRKKR 1069
>At2g31210.1 68415.m03811 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain; PMID: 12679534
Length = 428
Score = 29.9 bits (64), Expect = 0.34
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 56 SCDKSDRHGVAEDGTTVVTDYRKPSDESEVDDRKKRCIDRYDSSESSD 103
S K DR + +DG + + R+ E + +KRC R+ ++E D
Sbjct: 239 SPSKGDRASILQDGIDYINELRRRVSELKYLVERKRCGGRHKNNEVDD 286
>At1g22000.1 68414.m02752 F-box family protein contains F-box domain
Pfam:PF00646
Length = 727
Score = 29.5 bits (63), Expect = 0.45
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 30 SKKCSDIVFDDESVKLSYFKKRKTSESCDKSDRHGVAEDGTTVVTDYRKPSDESEVDDRK 89
+KKCS V+ D S KL K S S KS G D +V + DE+
Sbjct: 453 TKKCSAYVYKDPSTKLEVLKSELES-SMAKSRALGDRNDEMSVELEEHATRDENAERSYS 511
Query: 90 KRCI 93
KR +
Sbjct: 512 KRSL 515
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 29.1 bits (62), Expect = 0.59
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 12 LKQMNNLTFTATDKGHRDSKKCSDIVFDDESVKLSYFKKRKTSESCDKSDRHGVAEDGTT 71
LK + L T + + SD+ D ++K + KRK ++ SD H V+++
Sbjct: 1584 LKTSDTLIQTGYASDCQQKRNPSDL--DSSNLKRMVYVKRKANQLVAASDIHDVSQNQIP 1641
Query: 72 VVTDYRKPSDESEVDDRKKRC 92
Y K S V + + RC
Sbjct: 1642 SSDGYFKRSKNQLVRNSESRC 1662
>At5g07710.1 68418.m00884 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 468
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 31 KKCSDIVFDDESVKLSYFKKRKTSESCDKSDRHGVAEDGTTVVTDYRKPS 80
K C+ ++F + S+ ++ + E+ R + +G TV T R PS
Sbjct: 173 KYCATVLFLESSLPYAHVDNSVSPETISSRRRIDASREGNTVTTSVRLPS 222
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 1 MADGSPEDRAGLKQMNNLTFTATDKGHRDSKKCSDIVFDDE 41
+A G +D+A L ++ N + A GH+DS C +D +
Sbjct: 86 VATGGGDDKAFLWKIGNGDWAAELPGHKDSVSCLAFSYDGQ 126
>At3g19240.1 68416.m02441 expressed protein
Length = 648
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 53 TSESCDKSDRHGVAEDGTTVVTDYRKPSDESEVDDRKKRCIDRYDSSESSD 103
TS+S + DR ++E T +DY + DE + DD KK+ + SD
Sbjct: 3 TSQS--REDR--ISESDTESDSDYYEEEDEDQYDDAKKQGSSSVSGTRPSD 49
>At4g38910.1 68417.m05514 expressed protein
Length = 445
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 3 DGSPEDRAGLKQM--NNLTFTATDKGHRDSKKCSDIVFDDESVKL 45
DGS E ++G K+ NN A D KKC + +F++++ KL
Sbjct: 384 DGSAE-KSGNKETKDNNCESLAIVVNSADQKKCMEKIFENKTAKL 427
>At2g27440.1 68415.m03316 rac GTPase activating protein, putative
similar to rac GTPase activating protein 3 [Lotus
japonicus] GI:3695063; contains Pfam profiles PF00620:
RhoGAP domain, PF00786: P21-Rho-binding domain
Length = 368
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 40 DESVKLSYFKKRKTSESCDKSDRHGVAEDGTTVVTDYRKPSDESEVDDRKKR 91
++ V++ ++ + E D D + T++ D KPS +DRKK+
Sbjct: 315 NQEVEIYVLEEVEEEEGEDVDDLDNEESERITLLADEHKPSSAVNANDRKKQ 366
>At5g52950.1 68418.m06570 expressed protein ; expression supported
by MPSS
Length = 945
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 33 CSDIVFDDESVKLSYFKKRKTSESCDKSDRHGVAEDG 69
C + +FDD ++LS+ + E C+ + G + G
Sbjct: 205 CVNELFDDRDIQLSWIDVKSGDERCELGLKSGFFDSG 241
>At5g15140.1 68418.m01774 aldose 1-epimerase family protein similar
to SP|P05149 Aldose 1-epimerase precursor (EC 5.1.3.3)
(Mutarotase) from Acinetobacter calcoaceticus; contains
Pfam profile PF01263 Aldose 1-epimerase
Length = 490
Score = 26.6 bits (56), Expect = 3.1
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 24 DKGHRDSKKCSDIVFDDESVKLSYFKKRKTSESCDKSDRHGVAEDGTTVVTDYRKPSDES 83
+K H D KK DD+ K KK+ D SD +D D DE
Sbjct: 94 EKKHVDKKKSGGHDKDDDDEKKHKDKKKDGHNDDDDSDDDTDDDDDD---DDDDDDDDEV 150
Query: 84 EVDDRKKRCIDRYD 97
+ DD +K I Y+
Sbjct: 151 DGDDNEKEKIGLYE 164
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 15 MNNLTFTATDKGHRDSKKCSDIVFDDESVKLSYFKKRK--------TSESCDKSDRHGVA 66
M+ + + + +KK +++DD ++ Y K +K S+ + +D+ G
Sbjct: 619 MDQAYYKGVVESYDAAKKKHLVIYDDGDQEILYLKNQKWSPLDESELSQDEEAADQTGQE 678
Query: 67 EDGTTV-VTDYRKPSDESEVDD 87
ED +TV +T K +S++D+
Sbjct: 679 EDASTVPLTKKAKTGKQSKMDN 700
>At1g23380.2 68414.m02924 homeobox transcription factor (KNAT6)
nearly identical to homeodomain transcription factor
KNAT6 (KNAT6L) GI:15991302 [Arabidopsis thaliana],
homeodomain transcription factor KNAT6 (KNAT6S)
[Arabidopsis thaliana] GI:15991300
Length = 326
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 38 FDDESVKLSYFKKRKTSESCDKSDRHGVAEDGTTVVTDYRKPSDESEVDDRKKRCIDR 95
FD+ + L+ + + + GV+EDG + D +D ++RC DR
Sbjct: 165 FDEATCFLNKIEMQLRNLCTGVESARGVSEDGVISSDEELSGGDHEVAEDGRQRCEDR 222
>At1g23380.1 68414.m02925 homeobox transcription factor (KNAT6)
nearly identical to homeodomain transcription factor
KNAT6 (KNAT6L) GI:15991302 [Arabidopsis thaliana],
homeodomain transcription factor KNAT6 (KNAT6S)
[Arabidopsis thaliana] GI:15991300
Length = 327
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 38 FDDESVKLSYFKKRKTSESCDKSDRHGVAEDGTTVVTDYRKPSDESEVDDRKKRCIDR 95
FD+ + L+ + + + GV+EDG + D +D ++RC DR
Sbjct: 166 FDEATCFLNKIEMQLRNLCTGVESARGVSEDGVISSDEELSGGDHEVAEDGRQRCEDR 223
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 48 FKKRKTSESCDKSDRHGVAEDGTTVVTDYRKPS-DESEVDDRKKRCIDRYDSSESS 102
++KR S S D+ +RH + D+R+ + S D K+R RYD+ S
Sbjct: 158 YRKRSRSRSYDRRERHEEKD------RDHRRRTRSRSASPDEKRRVRGRYDNESRS 207
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 48 FKKRKTSESCDKSDRHGVAEDGTTVVTDYRKPS-DESEVDDRKKRCIDRYDSSESS 102
++KR S S D+ +RH + D+R+ + S D K+R RYD+ S
Sbjct: 158 YRKRSRSRSYDRRERHEEKD------RDHRRRTRSRSASPDEKRRVRGRYDNESRS 207
>At5g42740.1 68418.m05205 glucose-6-phosphate isomerase, cytosolic
(PGIC) identical to SP|P34795 Glucose-6-phosphate
isomerase, cytosolic (EC 5.3.1.9) (GPI) (Phosphoglucose
isomerase) (PGI) (Phosphohexose isomerase) (PHI)
{Arabidopsis thaliana}; contains Pfam profile PF00342:
glucose-6-phosphate isomerase
Length = 560
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 29 DSKKCSDIVFDDESVKLSYFKKRKTSESCDK 59
D+ +C ++ + + + L Y ++R T E+ DK
Sbjct: 35 DANRCQSMMMEFDGLLLDYSRQRATVETMDK 65
>At4g26630.1 68417.m03837 expressed protein
Length = 763
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 40 DESVKLSYFKKRKTSESCDKSDRHGVAEDGTTVVTDYRKPSDESEVDDRKKRCIDRYDSS 99
D K+ + K E+ + ++ E+ T V + DES+V+D K+ D D+
Sbjct: 195 DMDEKVENGDENKQVENVEGKEKEDKEENKTKEVEAAKAEVDESKVEDEKEGSEDENDNE 254
Query: 100 --ESSD 103
ES D
Sbjct: 255 KVESKD 260
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 26 GHRDSKKCSDIVFDDESVKLSYFKKRKTSESCDKSDRHGVAEDGTTVVTDYRKPSDESEV 85
G + +K S+ + +E S +++K S ++S+ ++G + + ++ESEV
Sbjct: 107 GEENKEKESEGIVSNEDSN-SEIEEKKDSGGVEESEVEEKRDNGGGTEENEKSGTEESEV 165
Query: 86 DDRK 89
++RK
Sbjct: 166 EERK 169
>At1g65890.1 68414.m07477 acyl-activating enzyme 12 (AAE12) similar
to AMP-binding protein GI:1903034 from [Brassica napus];
contains Pfam AMP-binding domain PF00501; identical to
cDNA acyl-activating enzyme 12 (At1g65890) mRNA
GI:29893228, acyl-activating enzyme 12 [Arabidopsis
thaliana] GI:29893229
Length = 578
Score = 25.8 bits (54), Expect = 5.5
Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 6/66 (9%)
Query: 28 RDSKKCSDIVFDDESVKLSYFKKRKTSESCDKSDRHGVAEDGTTVVTDYRKPSDESEVDD 87
RD K +IV S+ Y K K + K HG G V P E+ D
Sbjct: 387 RDGKTMGEIVMKGSSIMKGYLKNPKATYEAFK---HGWLNSGDVGVI---HPDGHVEIKD 440
Query: 88 RKKRCI 93
R K I
Sbjct: 441 RSKDII 446
>At1g21530.1 68414.m02693 AMP-binding protein, putative strong
similarity to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501; identical to cDNA adenosine monophosphate
binding protein 10 AMPBP10 (AMPBP10) GI:20799728
Length = 547
Score = 25.8 bits (54), Expect = 5.5
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 6 PEDRAGLKQ---MNNLTFTATDKGHR--------DSKKCSDIVFDDESVKLSYFKKRKTS 54
P +RA LK + L FT D R D +IVF SV L Y+K + +
Sbjct: 348 PLERARLKSRQGVRTLGFTEVDVRDRKTGKSVKHDGVSVGEIVFRGSSVMLGYYKDPQGT 407
Query: 55 ESCDKSD 61
+C + D
Sbjct: 408 AACMRED 414
>At5g55660.1 68418.m06940 expressed protein similar to unknown
protein (pir||T08929)
Length = 778
Score = 25.4 bits (53), Expect = 7.3
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 16 NNLTFTATDKGHRDSKKCSDIVFDDESVKLSYFKKRKTSESCDKSDRHGVAEDGTTVVTD 75
N + + D+ + S+ ++ ++ES + + KKR + S DK + G + T V
Sbjct: 554 NGIPDKSEDEAPQLSESEENVESEEESEEETKKKKRGSRTSSDKKESAGKSRSKKTAVPT 613
Query: 76 YRKPSDESEVDDRKKRCIDRYDSSESSD 103
P ++ +K+ R S + SD
Sbjct: 614 KSSPPKKA---TQKRSAGKRKKSDDDSD 638
>At5g01980.1 68418.m00117 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 493
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 76 YRKPSDESEVDDRKKRCIDRYDSSESSD 103
Y P+D+ + ++ K+ +D + S SSD
Sbjct: 392 YELPTDDKDYEEGKRNVLDVSEDSSSSD 419
>At3g56720.1 68416.m06309 expressed protein
Length = 386
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 67 EDGTTVVTDYRKPSDESEVDDRKKRCIDRYDSSESSD 103
+DG T +RKPS++ ++R + D S SSD
Sbjct: 11 DDGGDTTTAFRKPSNDGTSRKYRRRAL-ADDGSSSSD 46
>At1g77590.1 68414.m09034 long-chain-fatty-acid--CoA ligase family
protein / long-chain acyl-CoA synthetase family protein
(LACS9) similar to LACS 3 [SP|O95573] from Homo Sapiens,
LACS 3 [SP|Q63151] from Rattus norvegicus; contains Pfam
HMM hit: AMP-binding enzymes PF00501
Length = 691
Score = 25.4 bits (53), Expect = 7.3
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 35 DIVFDDESVKLSYFKKRKTSESCDKSDRHGVAEDGTTVVTDYRKPSDESEVDDRKK 90
+IV ++ L YFK + ++ K D G+ T + + P E+ DRKK
Sbjct: 499 EIVIGGSNITLGYFKNEEKTKEVYKVDEKGMRWFYTGDIGRFH-PDGCLEIIDRKK 553
>At5g53930.1 68418.m06710 expressed protein
Length = 529
Score = 25.0 bits (52), Expect = 9.6
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 34 SDIVFDDESVKLSYFKKRKTSESCDKSDRHGVAEDGTTVVTD---YRKPSDESEVDDR-- 88
S + D S KL KK+K+ + K R + ++ + +D Y D+ +
Sbjct: 7 SSKIIKDSSNKLRSVKKKKSKRNKSKKIRR-IKDESESSGSDSSLYSSSEDDYRRKKKRR 65
Query: 89 ----KKRCIDRYDSSESSD 103
KKR RY SSES D
Sbjct: 66 SKLSKKRSRKRYSSSESDD 84
>At5g35160.1 68418.m04167 endomembrane protein 70, putative p76,
Homo sapiens, EMBL:HSU81006
Length = 627
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 33 CSDIVFDDESVKLSYFKKRKTSESCDKSDRHGVAEDGTTVVTDYRKPSDESEV 85
CS + + KL +++ T CD + ++G ++V Y +ES++
Sbjct: 189 CSFAHNGESTKKLKMYERYTTPIKCDSTRVSMSVKEGQSIVFSYEVSFEESDI 241
>At2g44250.1 68415.m05506 expressed protein contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 409
Score = 25.0 bits (52), Expect = 9.6
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 50 KRKTSESCDKSDR---HGVAEDGTTVVTDYRKPSDESEVDDRKKRCID--RYDSSES 101
+R+T + +SD HG T T Y P D++EV + +D Y S+S
Sbjct: 121 RRRTRDDLLRSDSIKTHGRKNPPTISPTTYHLPDDQTEVHEHASVYLDYGEYHGSKS 177
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 25.0 bits (52), Expect = 9.6
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 29 DSKKCSDIVFDDESVKLSYFKKRKTSESCDKSDRHGVAEDGTTVVTDYRKPSDESEVD 86
+S+ + + D+ES ++++ K+K+S+ S V +D V D K SD V+
Sbjct: 223 NSRDDENTIEDEESPEVTFSGKKKSSKKKGGSVLASVGDDS---VADETKTSDTKNVE 277
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 25.0 bits (52), Expect = 9.6
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 23 TDKGHRDSKKCSDIVFDDESVKLSYFKKRKTSESCD----KSDRHGVAEDGTTVVTDYRK 78
+DK SK+ DD S KR++ E+ D K RH + T +D +
Sbjct: 681 SDKDRDRSKQRQRYKSDDPESDQSRKGKRQSEENSDRETHKERRHRHRKRRRTQNSDDQN 740
Query: 79 PSDESEVDDRKKR 91
P + EV++ +R
Sbjct: 741 PKESEEVEEEIER 753
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.309 0.126 0.354
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,979
Number of Sequences: 28952
Number of extensions: 102382
Number of successful extensions: 288
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 36
length of query: 104
length of database: 12,070,560
effective HSP length: 71
effective length of query: 33
effective length of database: 10,014,968
effective search space: 330493944
effective search space used: 330493944
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 52 (25.0 bits)
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