Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000845-TA|BGIBMGA000845-PA|IPR013057|Amino acid
transporter, transmembrane
         (214 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    26   0.23 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    26   0.23 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   6.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 10/111 (9%)

Query: 96  TKTPSLSYTDTCETVFKIGPRKLRPYSLHVRYFVDAAMAGVCLGGTSVTAIFAMEGINVV 155
           T+  + ++ D  + VF  G  K   +   +RYFV    +G   G TS+  ++ ++     
Sbjct: 86  TQALNFAFKDKYKQVFLGGVDKNTQF---LRYFVGNLASGGAAGATSLCFVYPLDFARTR 142

Query: 156 MPVENEMAKPEK-FLGCPGVLNFTMIFVAVLYGVVGIFGYLKYGNEVMGSV 205
           +  +   A  E+ F G    L  T IF A   G+ G+  Y  +G  V G +
Sbjct: 143 LAADVGKAGGEREFTGLGNCL--TKIFKA--DGITGL--YRGFGVSVQGII 187


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 10/111 (9%)

Query: 96  TKTPSLSYTDTCETVFKIGPRKLRPYSLHVRYFVDAAMAGVCLGGTSVTAIFAMEGINVV 155
           T+  + ++ D  + VF  G  K   +   +RYFV    +G   G TS+  ++ ++     
Sbjct: 86  TQALNFAFKDKYKQVFLGGVDKNTQF---LRYFVGNLASGGAAGATSLCFVYPLDFARTR 142

Query: 156 MPVENEMAKPEK-FLGCPGVLNFTMIFVAVLYGVVGIFGYLKYGNEVMGSV 205
           +  +   A  E+ F G    L  T IF A   G+ G+  Y  +G  V G +
Sbjct: 143 LAADVGKAGGEREFTGLGNCL--TKIFKA--DGITGL--YRGFGVSVQGII 187


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 159 ENEMAKPEKFLGCPGVLNFTMIFVAVLYGVVGI 191
           EN    P   L C       M+F+AVLY  +G+
Sbjct: 198 ENMPEFPLYQLSCILFFLIPMVFIAVLYIRIGL 230


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 14/44 (31%), Positives = 20/44 (45%)

Query: 40  FFHLLKSSLGSGILAMPMAFKNIGLIPGSIGTVVVAVIATHCVH 83
           FF L+   + S  LA+P+  K +      +G  VV  I    VH
Sbjct: 280 FFLLISEIIPSTSLALPLLGKYLLFTMILVGLSVVITIVILNVH 323


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,439
Number of Sequences: 429
Number of extensions: 2126
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 214
length of database: 140,377
effective HSP length: 55
effective length of query: 159
effective length of database: 116,782
effective search space: 18568338
effective search space used: 18568338
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)