GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000845-TA|BGIBMGA000845-PA|IPR013057|Amino acid
transporter, transmembrane
         (214 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    50   2e-07
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    31   0.097
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    29   0.68 
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    27   2.1  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   6.4  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   8.4  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 22/67 (32%), Positives = 42/67 (62%), Gaps = 3/67 (4%)

Query: 145 AIFAMEGINVVMPVENEMAKPEKFLGCPGVLNFTMIFVAVLYGVVGIFGYLKYGNEVMGS 204
           AIF  EGI +++P++ +MAKP+     P +L   M  +++L+  +G+  Y  +G++V   
Sbjct: 464 AIFTYEGICLILPIQEQMAKPKNL---PKLLTGVMAAISLLFISIGLLSYAAFGSKVKTV 520

Query: 205 VTINLPQ 211
           V +N+P+
Sbjct: 521 VILNMPE 527



 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)

Query: 16  AVVENDYNPFEHRTLEHKTSTIG------AFFHLLKSSLGSGILAMPMAFKNIGLIPGSI 69
           + V ++  P   R   +K  T G      A   LLKS +G+G+L +P AFK  GL+  S 
Sbjct: 251 STVPSEQEPLISRHGRYKLQTPGNASNGKAVLLLLKSFVGTGVLFLPKAFKLGGLVFSSA 310

Query: 70  GTVVVAVIATHCVHILVSTSRDV 92
             ++V V++  C  +L+ T   V
Sbjct: 311 TLLIVGVLSHICFLLLIQTRMKV 333


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 420

 Score = 31.5 bits (68), Expect = 0.097
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 33 KTSTIGAFFHLLKSSLGSGILAMPMAFKNIGLIPGSIGTVVVAVIAT 79
          K     +  +L  + LG+GIL++P AF   GL+ G + T+V +  A+
Sbjct: 18 KAGFFSSVINLANTILGAGILSLPNAFTKTGLLFGCL-TIVFSAFAS 63



 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)

Query: 173 GVLNFTM----IFVAVLYGVVGIFGYLKYGNEVMGSV 205
           G +NFTM    I   +LY +V I GYL +G+   G++
Sbjct: 235 GFVNFTMFTAIISSTLLYLLVAITGYLSFGSLASGNI 271


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 21/74 (28%), Positives = 31/74 (41%)

Query: 31  EHKTSTIGAFFHLLKSSLGSGILAMPMAFKNIGLIPGSIGTVVVAVIATHCVHILVSTSR 90
           E   S  G +  +L+S   +GI          G   GSIG  +V  +      ++V+TSR
Sbjct: 610 EFNKSLTGTYLDVLESGAKNGITYQDKYALVTGAGAGSIGAQIVEGLLAGGAKVVVTTSR 669

Query: 91  DVCKATKTPSLSYT 104
              K T+     YT
Sbjct: 670 FSRKVTEFYQSLYT 683


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 6/61 (9%)

Query: 35  STIGAFFH-LLKSSLGSGILAMPMAFKNIGLIPGSIGTVVVAVIAT--HCVHILVSTSRD 91
           +T+G  F+ +L SSLG  +  + +   N+G   G++G   + VIA   +C+ +L++ SR+
Sbjct: 305 ATMGHDFNAILGSSLGQPVAQVLV--NNVGN-KGALGIFSLLVIALCLNCISLLIAASRE 361

Query: 92  V 92
           V
Sbjct: 362 V 362


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 36  TIGAFFHLLKSSLGSGILAMPMAFKNIGLIPGSIGTVVV 74
           T+G FF +L + +   IL++   +K +GL+  S   V++
Sbjct: 915 TLGTFFQILTNIISVTILSLATGWK-LGLVTLSTSPVII 952


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 95  ATKTPSLSYTDTCETVFKIGP--RKLRPYSLHVRYFVDAAMAGVCLGGTSVT-AIFAMEG 151
           AT  P  S         K  P    +   SL    F   A  G     TS+T A    + 
Sbjct: 360 ATSAPKKSTAPFAINAVKPAPGLSNISSASLPKPSFAKQAAVGSQSSTTSMTTARLLSDR 419

Query: 152 INVVMPVENEMAKPEK 167
             VVMPV N  A PEK
Sbjct: 420 FPVVMPVANTAAIPEK 435


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.137    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 927,769
Number of Sequences: 5004
Number of extensions: 35118
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 9
length of query: 214
length of database: 2,362,478
effective HSP length: 70
effective length of query: 144
effective length of database: 2,012,198
effective search space: 289756512
effective search space used: 289756512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)