Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000844-TA|BGIBMGA000844-PA|IPR013057|Amino acid
transporter, transmembrane
         (503 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   1.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   2.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   4.5  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   7.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   7.8  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   7.8  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 5/38 (13%)

Query: 394 HNITQIAIRTAAVVGSVILAAAIPNLELVINLCGAIFL 431
           + +TQ AI  A V+GS+I+   I N    I +C A+FL
Sbjct: 36  YTVTQ-AILIALVLGSIIVGTVIGN----ILVCVAVFL 68


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 83  MGSLAHLLKS-SLGSGVLAMPAAFKNAGLVMGVIGNIFIGFI 123
           +G L  L+   +LG  +L + A    A + +G  GN+F G++
Sbjct: 208 VGGLTGLIGCLTLGRRILRLDA-IDEASIAVGASGNVFAGYL 248


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 13/98 (13%)

Query: 45  LTSNSGFQSTLTLGSKEVINEKAYDP-FEHRNVEHPTSTMGSLAHLLKSSLGSGVLAMPA 103
           +T+N  +   L+ G   V  E+  +P +E  NV++     GS   L   S G  V     
Sbjct: 264 VTNNLYYSPLLSHGLYYVDTEQFSNPQYEENNVQYE----GSQDILNTQSFGKVVS---- 315

Query: 104 AFKNAGLVMGVIGNIFIGFICTHCVYVLVKTSQEVCVE 141
             KN  L +G++GN   G  C +   VL + S +V  +
Sbjct: 316 --KNGVLFLGLVGN--SGIACVNEHQVLQRESFDVVAQ 349


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 28  VEKKDGIVLNNFNSTANLTSNSGFQSTLTLGSKEVINEKA 67
           V KK  +  NNFNS     SN+       LG   +I++ A
Sbjct: 523 VPKKLNMFYNNFNSDIKSISNNEQVKVSALGFFILISQDA 562


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 240 SAIANVFLVICFGITLYYIFKD 261
           SAIA V  V  +G+ +Y  FKD
Sbjct: 322 SAIAYVSDVFRYGLLIYDFFKD 343


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 28  VEKKDGIVLNNFNSTANLTSNSGFQSTLTLGSKEVINEKA 67
           V KK  +  NNFNS     SN+       LG   +I++ A
Sbjct: 523 VPKKLNMFYNNFNSDIKSISNNEQVKVSALGFFILISQDA 562


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.138    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,879
Number of Sequences: 429
Number of extensions: 5106
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 8
length of query: 503
length of database: 140,377
effective HSP length: 61
effective length of query: 442
effective length of database: 114,208
effective search space: 50479936
effective search space used: 50479936
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 46 (22.6 bits)