GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000844-TA|BGIBMGA000844-PA|IPR013057|Amino acid
transporter, transmembrane
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    91   2e-19
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    45   3e-05
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    29   1.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        28   3.5  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    28   3.5  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    27   4.6  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   8.0  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 91.5 bits (217), Expect = 2e-19
 Identities = 88/370 (23%), Positives = 168/370 (45%), Gaps = 33/370 (8%)

Query: 89  LLKSSLGSGVLAMPAAFKNAGLVMGVIGNIFIGFICTHCVYVLVKTSQEVCVEAKKPSMG 148
           LLKS +G+GVL +P AFK  GLV      + +G +   C  +L++T  +V      P   
Sbjct: 284 LLKSFVGTGVLFLPKAFKLGGLVFSSATLLIVGVLSHICFLLLIQTRMKV------PG-S 336

Query: 149 FAETCGAAFEFGPKKLRPWSNFVRIFVDYALTCTYLAALCVYVVFIAENFKQVLDVYAPN 208
           F +  G  +  GP         +R  +  ++  + +     Y+ F+A   +  + V +  
Sbjct: 337 FGDIGGTLY--GPH--------MRFAILASIVVSQIGFSSAYISFVASTLQACVKVISTT 386

Query: 209 DN-LSVQAYCALTLVPLVLMSQIRNLKWLVPFSAIANVFLVICFGITLYYIFKDLPVKSE 267
                +  +  +  +  V +S +R +  L   + IA+VF+++  GI   Y +  + + ++
Sbjct: 387 HREYHLAVFIFIQFLVFVPLSLVRKISKLSATALIADVFILL--GILYLYFWDVITLATK 444

Query: 268 ATM-VASVSK--WPLFISTVVFAMEGIGVVMPIENEMAKPQHFLGCPGVLNVAMXXXXXX 324
               VA  +K  + LFI   +F  EGI +++PI+ +MAKP++    P +L   M      
Sbjct: 445 GIADVAMFNKTDFSLFIGVAIFTYEGICLILPIQEQMAKPKNL---PKLLTGVMAAISLL 501

Query: 325 XXXXXXXXXMTFGDTVHGSVTLNLPKDDVLAQAAKILMALAILFTYSLQLYVPMEMIWRQ 384
                      FG  V   V LN+P +       + L A+AIL +  LQL+  + +I + 
Sbjct: 502 FISIGLLSYAAFGSKVKTVVILNMP-ESTFTVIIQFLYAIAILLSTPLQLFPAIAIIEQG 560

Query: 385 LKDKITVRYHNI--TQIAIRTAAVVGSVILA-AAIPNLELVINLCGAIFLSTLGLLTPAI 441
           +  +   R   I   +  +R   V+ +++++ A    L+L +++ G++    L  + P +
Sbjct: 561 IFTRSGKRNRKIKWRKNYLRVLIVILAILISWAGSSRLDLFVSMVGSVCCIPLIYMYPPM 620

Query: 442 VD---TVHNW 448
           +      +NW
Sbjct: 621 LHYKACANNW 630


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 72/362 (19%), Positives = 141/362 (38%), Gaps = 25/362 (6%)

Query: 85  SLAHLLKSSLGSGVLAMPAAFKNAGLVMGVIGNIFIGFICTHCVYVLVKTSQEVCVEAKK 144
           S+ +L  + LG+G+L++P AF   GL+ G +  +F  F     +Y +   SQ  C  A+ 
Sbjct: 24  SVINLANTILGAGILSLPNAFTKTGLLFGCLTIVFSAFASFLGLYFV---SQ--CA-ARL 77

Query: 145 PSMGFAETCGAAFEFGPKKLRPWSNFVRIFVDYALTCTYLAALCVYVVFIAENFKQVLDV 204
           P  G A     A    P     +   + +   + +  +YL  +   +  IA +      +
Sbjct: 78  P-RGKASFAAVAKHTFPSLAVVFDASIAVKC-FGVAVSYLVIVGDLMPQIAPSLGLSSPM 135

Query: 205 YAPNDNLSVQAYCALTLVPLVLMSQIRNLKWLVPFSAIANVFLVICFGITLYYIFKDLPV 264
           +       V A   LT  PL  + ++ +L+     S IA  +LV    I LY+      V
Sbjct: 136 FLRRQTWIVFALFVLT--PLSFLKRLDSLRHTSVISLIALCYLVF---IVLYHFIIGDTV 190

Query: 265 KSEATMVAS------VSKWPLFISTVVFAMEGIGVVMPIENEMAKPQHFLGCPGVLNVAM 318
           K E            +S  P+F+           V+  + N     Q F+     +  A+
Sbjct: 191 KGEIRYFVPESGFGYLSVLPVFVFGFTCHQNAFSVINEVRN---FSQGFVNF--TMFTAI 245

Query: 319 XXXXXXXXXXXXXXXMTFGDTVHGSVTLNLPKDDVLAQAAKILMALAILFTYSLQLYVPM 378
                          ++FG    G++        +     K+ + + +LF+Y LQ +   
Sbjct: 246 ISSTLLYLLVAITGYLSFGSLASGNIIAMYDNTSIWIIGGKLAIVVLVLFSYPLQCHPCR 305

Query: 379 EMIWRQLKDKITVRYHNITQIAIRTAAV-VGSVILAAAIPNLELVINLCGAIFLSTLGLL 437
             +++ ++   +    +    A+ T  + + +  LA  + +LE+V+   G+   + +  +
Sbjct: 306 NSVYQAIRRSYSAHDMSDGYHAVITLCILLFTHSLALLLSSLEMVLAFVGSTGSTFISFI 365

Query: 438 TP 439
            P
Sbjct: 366 LP 367


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 31  KDGIVLNNFNSTANLTSNSGFQSTLTLGSKEVINEKAYDPFEHRNV--EHPTSTMGSLAH 88
           K G + ++ N+ + LTS +   S+ T  +   I      PF    V   +P+ST     +
Sbjct: 75  KSGNMWDSLNAPSELTSKNPTVSSTTSSANPAIVSNGGSPFYKNPVVANNPSSTFDMSTN 134

Query: 89  LLKSSLGSGVLAMPAAFKNAGLVMGVIGNIF 119
           L  S   +   +   AF N G+  G + + F
Sbjct: 135 LFNSK--NANTSFTNAFSNEGISPGFLRDCF 163


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 337  GDTVHGSVTLNLPKDDVLAQAAKILMALAIL 367
            GD+V    T +L  D  L  A+K+L AL +L
Sbjct: 1529 GDSVESDSTYSLHTDTTLMNASKVLRALQVL 1559


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 175 VDYALTCTYLAALCVYVVFIAENFKQVLDVYAPNDNLSVQAYCALTLVPLVLMSQIRNL- 233
           + +  +C +L++L     FI+ + K+ L +        +  +     + L L + IR+L 
Sbjct: 295 LQFVSSCFFLSSL-----FISPSNKESLVILFAAPVFLITLFAMFLWIVLALNNTIRDLR 349

Query: 234 --KWLVPFSAIANVFLVICFGITLY 256
             K  V       +++VICFGI  Y
Sbjct: 350 IRKQTVKAQMYTRLWIVICFGIVAY 374


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 32  DGIVLNNFNSTANLTSNSGFQ 52
           DG  LN+ N+T  L +N+GFQ
Sbjct: 124 DGSTLNSNNTTQQLNNNNGFQ 144


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 109 GLVMGVIGNIFIGFICTHCVYVLVKT 134
           GL+MGV  ++F G+    C   ++KT
Sbjct: 320 GLIMGVFNSVFAGYCTIFCDEEVLKT 345


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.138    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,084,418
Number of Sequences: 5004
Number of extensions: 81911
Number of successful extensions: 320
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 9
length of query: 503
length of database: 2,362,478
effective HSP length: 76
effective length of query: 427
effective length of database: 1,982,174
effective search space: 846388298
effective search space used: 846388298
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)