GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000844-TA|BGIBMGA000844-PA|IPR013057|Amino acid
transporter, transmembrane
         (503 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprote...    25   6.3  
AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/T...    24   8.3  

>AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprotein
           protein.
          Length = 470

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 242 IANVFLVICFGITLYYIFKDLPVKSEATMVAS 273
           I  V  +I FG    Y  + LPVK+E   V S
Sbjct: 16  IVQVVFIIVFGFCTDYAKELLPVKNETARVHS 47


>AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/Thr
           phosphatase protein.
          Length = 1978

 Score = 24.2 bits (50), Expect = 8.3
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 386 KDKITVRYHNITQIAIRTAAVVGSVILAAAIPNLELVINLCGAIFLSTLGLL 437
           ++K+TVR+  +   ++R        ILA +   L L  N  GA     LGL+
Sbjct: 31  EEKLTVRFTEVAGESVRYLGQTDEGILALSNYRLFLQKNTTGAEVSVPLGLI 82


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.326    0.138    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 462,856
Number of Sequences: 2123
Number of extensions: 16999
Number of successful extensions: 117
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 2
length of query: 503
length of database: 516,269
effective HSP length: 67
effective length of query: 436
effective length of database: 374,028
effective search space: 163076208
effective search space used: 163076208
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 50 (24.2 bits)