Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000843-TA|BGIBMGA000843-PA|IPR006202|Neurotransmitter-
gated ion-channel ligand-binding, IPR006028|Gamma-aminobutyric acid A
receptor, IPR006201|Neurotransmitter-gated ion-channel,
IPR006029|Neurotransmitter-gated ion-channel transmembrane region
         (418 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26780.1 68417.m03857 co-chaperone grpE family protein simila...    30   3.3  
At2g42550.1 68415.m05266 protein kinase family protein contains ...    29   5.8  
At1g67520.1 68414.m07692 lectin protein kinase family protein co...    29   7.6  

>At4g26780.1 68417.m03857 co-chaperone grpE family protein similar
           to chaperone GrpE type 2 [Nicotiana tabacum] GI:3851640;
           contains Pfam profile PF01025: co-chaperone GrpE
          Length = 327

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 81  SKVTEIAELTHKFSSVTL-YRNQTVRYSARMHAIIACQMEFQLYPMDIQSCPIY-IESFS 138
           S+VT  A +    S+VTL  RNQT  +S+R H+ +A     +L P  +     + ++ F+
Sbjct: 8   SRVTRNAGIRSSLSAVTLPARNQTPVFSSRFHS-LAHDFSHKLVPAQMSMMDSFALQRFN 66

Query: 139 YSN 141
           +S+
Sbjct: 67  FSS 69


>At2g42550.1 68415.m05266 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 344

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 260 KALDLWMAGCMMF-VFAALGEFVVVKVLDKQYQMNKNKAQESMPRIIP 306
           KALDLW  GC++  ++  +  +  V+  D    ++K KA E +P+ +P
Sbjct: 198 KALDLWSLGCIVLEMYTGVIPWSEVEFEDLAPALSKGKAPE-IPKSLP 244


>At1g67520.1 68414.m07692 lectin protein kinase family protein
           contains Pfam domains PF00069: Protein kinase domain and
           PF01453: Lectin (probable mannose binding)
          Length = 587

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 368 LQVAWLDADTGQERVLWREIDKLSRVVFPALFLLF 402
           LQ+  +DAD   +RVLW+  D  +  + P + L F
Sbjct: 134 LQLQEMDADGSMKRVLWQSFDYPTDTLLPGMKLGF 168


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.325    0.139    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,104,462
Number of Sequences: 28952
Number of extensions: 353905
Number of successful extensions: 961
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 960
Number of HSP's gapped (non-prelim): 3
length of query: 418
length of database: 12,070,560
effective HSP length: 83
effective length of query: 335
effective length of database: 9,667,544
effective search space: 3238627240
effective search space used: 3238627240
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)