Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000843-TA|BGIBMGA000843-PA|IPR006202|Neurotransmitter-
gated ion-channel ligand-binding, IPR006028|Gamma-aminobutyric acid A
receptor, IPR006201|Neurotransmitter-gated ion-channel,
IPR006029|Neurotransmitter-gated ion-channel transmembrane region
(418 letters)
Database: tribolium
317 sequences; 114,650 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor su... 103 2e-24
S78567-1|AAB34900.1| 141|Tribolium castaneum GABA receptor subu... 97 2e-22
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 46 5e-07
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 44 2e-06
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 44 3e-06
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 43 5e-06
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 43 5e-06
AJ850294-1|CAH64514.1| 539|Tribolium castaneum putative esteras... 25 1.0
AJ850293-1|CAH64513.1| 539|Tribolium castaneum putative esteras... 25 1.0
AJ850292-1|CAH64512.1| 539|Tribolium castaneum putative esteras... 25 1.0
AM292372-1|CAL23184.2| 771|Tribolium castaneum gustatory recept... 23 5.4
>AF025669-1|AAB81523.1| 243|Tribolium castaneum GABA receptor
subunit protein.
Length = 243
Score = 103 bits (248), Expect = 2e-24
Identities = 60/189 (31%), Positives = 100/189 (52%), Gaps = 10/189 (5%)
Query: 4 PARKGQPVIVEFSIYVVDVNSINVEDMDFRVDMFIRQTWSESRLQLPEDIFEEGDDHVTL 63
P G PV V ++YV+ ++S++ MDF +D + RQ W++ RL + G + +++
Sbjct: 58 PNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYGK---RPGVETLSV 114
Query: 64 PPEFFDNLWHPDPYFLNSKVTEIAELTHKFSSVTLYRNQTVRYSARMHAIIACQMEFQLY 123
EF N+W PD +F+N K + T + ++ + ++ S R+ +C M Q
Sbjct: 115 GSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYL 174
Query: 124 PMDIQSCPIYIESFSYSNQKVRFRWSEA--GVTINPELKLLQYHI-GQPLRLEETNGYMI 180
PMD Q C I IESF Y+ + +R++W+E V ++ E+ L Q+ + G R E +
Sbjct: 175 PMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRRRAVEIS---- 230
Query: 181 DKDGNYSRL 189
GNYSRL
Sbjct: 231 LTTGNYSRL 239
>S78567-1|AAB34900.1| 141|Tribolium castaneum GABA receptor subunit
protein.
Length = 141
Score = 97.1 bits (231), Expect = 2e-22
Identities = 49/145 (33%), Positives = 81/145 (55%), Gaps = 7/145 (4%)
Query: 132 IYIESFSYSNQKVRFRWSEA--GVTINPELKLLQYHI-GQPLRLEETNGYMIDKDGNYSR 188
I IESF Y+ + +R++W+E V ++ E+ L Q+ + G R E + GNYSR
Sbjct: 1 IEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQRAMEISL----TTGNYSR 56
Query: 189 LVVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLDLDAIPGRXXXXXXXXXXXXXXFTG 248
L +F R +G++LIQ + PS L+V++SW SFWL+ +A P R +
Sbjct: 57 LACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSS 116
Query: 249 LRADIPPVAYVKALDLWMAGCMMFV 273
A +P ++YVK++D+++ C + V
Sbjct: 117 TNAALPKISYVKSIDVYLGTCFVMV 141
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 46.0 bits (104), Expect = 5e-07
Identities = 61/285 (21%), Positives = 117/285 (41%), Gaps = 13/285 (4%)
Query: 2 RPPARKGQPVIVEFSIYVVDVNSINVEDMDFRVDMFIRQTWSESRLQLPEDIFEEGDDHV 61
RP A + +P+ V+F + + + ++ ++ + ++ W++ L+ E + G +
Sbjct: 20 RPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYG-GVKDL 78
Query: 62 TLPPEFFDNLWHPDPYFLNSKVTEIAELTHKFSSVTLYRNQTVRYSARMHAIIACQMEFQ 121
+ P + LW PD NS E + T + ++V + N + Y C+M+
Sbjct: 79 RITP---NKLWKPDVLMYNS-ADEGFDGTFQ-TNVVVKHNGSCLYVPPGIFKSTCKMDIT 133
Query: 122 LYPMDIQSCPIYIESFSY-SNQKVRFRWSEAGVTINPELKLLQ-YHIGQPLRLEETNGYM 179
+P D Q C + S++Y NQ SE+G ++ + + Y IG P + + T Y
Sbjct: 134 WFPFDDQHCDMKFGSWTYDGNQLDLVLNSESGGDLSDFITNGEWYLIGMPGK-KNTIVYA 192
Query: 180 IDKDGNYSRLVVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLDLDAIPGRXXXXXXXX 239
+ Y + + R+ ++ P L+ ++ F L D+ G
Sbjct: 193 CCPE-PYVDVTFTIKIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDS--GEKLTLGVTI 249
Query: 240 XXXXXXFTGLRAD-IPPVAYVKALDLWMAGCMMFVFAALGEFVVV 283
F L A+ +P V+ L C+MF+ A+ VV
Sbjct: 250 LLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVVLTVV 294
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 44.4 bits (100), Expect = 2e-06
Identities = 60/285 (21%), Positives = 117/285 (41%), Gaps = 13/285 (4%)
Query: 2 RPPARKGQPVIVEFSIYVVDVNSINVEDMDFRVDMFIRQTWSESRLQLPEDIFEEGDDHV 61
RP A + +P+ V+F + + + ++ ++ + ++ W++ L+ E + G +
Sbjct: 20 RPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEY-GGVKDL 78
Query: 62 TLPPEFFDNLWHPDPYFLNSKVTEIAELTHKFSSVTLYRNQTVRYSARMHAIIACQMEFQ 121
+ P + LW PD NS E + T + ++V + N + Y C+++
Sbjct: 79 RITP---NKLWKPDVLMYNS-ADEGFDGTFQ-TNVVVKHNGSCLYVPPGIFKSTCKIDIT 133
Query: 122 LYPMDIQSCPIYIESFSY-SNQKVRFRWSEAGVTINPELKLLQ-YHIGQPLRLEETNGYM 179
+P D Q C + S++Y NQ SE+G ++ + + Y IG P + + T Y
Sbjct: 134 WFPFDDQHCDMKFGSWTYDGNQLDLVLNSESGGDLSDFITNGEWYLIGMPGK-KNTIVYA 192
Query: 180 IDKDGNYSRLVVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLDLDAIPGRXXXXXXXX 239
+ Y + + R+ ++ P L+ ++ F L D+ G
Sbjct: 193 CCPE-PYVDVTFTIKIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDS--GEKLTLGVTI 249
Query: 240 XXXXXXFTGLRAD-IPPVAYVKALDLWMAGCMMFVFAALGEFVVV 283
F L A+ +P V+ L C+MF+ A+ VV
Sbjct: 250 LLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVVLTVV 294
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 43.6 bits (98), Expect = 3e-06
Identities = 60/285 (21%), Positives = 115/285 (40%), Gaps = 13/285 (4%)
Query: 2 RPPARKGQPVIVEFSIYVVDVNSINVEDMDFRVDMFIRQTWSESRLQLPEDIFEEGDDHV 61
RP A + +P+ V+F + + + ++ ++ + ++ W++ L+ E + G +
Sbjct: 20 RPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYG-GVKDL 78
Query: 62 TLPPEFFDNLWHPDPYFLNSKVTEIAELTHKFSSVTLYRNQTVRYSARMHAIIACQMEFQ 121
+ P + LW PD NS E + T + ++V + + Y C+M+
Sbjct: 79 RITP---NKLWKPDVLMYNS-ADEGFDGTFQ-TNVVVKHGGSCLYVPPGIFKSTCKMDIT 133
Query: 122 LYPMDIQSCPIYIESFSY-SNQKVRFRWSEAGVTINPELKLLQ-YHIGQPLRLEETNGYM 179
+P D Q C + S++Y NQ SE+G ++ + + Y IG P + + T Y
Sbjct: 134 WFPFDDQHCDMKFGSWTYDGNQLDLVLNSESGGDLSDFITNGEWYLIGMPGK-KNTIVYA 192
Query: 180 IDKDGNYSRLVVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLDLDAIPGRXXXXXXXX 239
+ Y + + R+ ++ P L+ ++ F L D+ G
Sbjct: 193 CCPE-PYVDVTFTIKIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDS--GEKLTLGVTI 249
Query: 240 XXXXXXFTGLRAD-IPPVAYVKALDLWMAGCMMFVFAALGEFVVV 283
F L A+ IP + L C+MF+ A+ VV
Sbjct: 250 LLSLTVFLNLVAEKIPTTSDAVPLIGTYFNCIMFMVASSVVLTVV 294
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 42.7 bits (96), Expect = 5e-06
Identities = 60/285 (21%), Positives = 117/285 (41%), Gaps = 13/285 (4%)
Query: 2 RPPARKGQPVIVEFSIYVVDVNSINVEDMDFRVDMFIRQTWSESRLQLPEDIFEEGDDHV 61
RP A + +P+ V+F + + + ++ ++ ++++ W++ L+ E + G +
Sbjct: 20 RPVANESEPLEVKFGLTLQQIIDVDEKNQLLITNIWLSLEWNDYNLKWNESEYG-GVKDL 78
Query: 62 TLPPEFFDNLWHPDPYFLNSKVTEIAELTHKFSSVTLYRNQTVRYSARMHAIIACQMEFQ 121
+ P + LW PD NS E + T + ++V + + Y C+M+
Sbjct: 79 RITP---NKLWKPDVLMYNS-ADEGFDGTFQ-TNVVVKHGGSCLYVPPGIFKSTCKMDIT 133
Query: 122 LYPMDIQSCPIYIESFSY-SNQKVRFRWSEAGVTINPELKLLQ-YHIGQPLRLEETNGYM 179
+P D Q C + S++Y NQ SE+G ++ + + Y IG P + + T Y
Sbjct: 134 WFPFDDQHCDMKFGSWTYDGNQLDLVLNSESGGDLSDFITNGEWYLIGMPGK-KNTIVYA 192
Query: 180 IDKDGNYSRLVVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLDLDAIPGRXXXXXXXX 239
+ Y + + R+ ++ P L+ ++ F L D+ G
Sbjct: 193 CCPE-PYVDVTFTIKIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDS--GEKLTLGVTI 249
Query: 240 XXXXXXFTGLRAD-IPPVAYVKALDLWMAGCMMFVFAALGEFVVV 283
F L A+ +P V+ L C+MF+ A+ VV
Sbjct: 250 LLSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASSVVLTVV 294
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 42.7 bits (96), Expect = 5e-06
Identities = 60/285 (21%), Positives = 116/285 (40%), Gaps = 13/285 (4%)
Query: 2 RPPARKGQPVIVEFSIYVVDVNSINVEDMDFRVDMFIRQTWSESRLQLPEDIFEEGDDHV 61
RP A + +P+ V+F + + + ++ ++ ++++ W++ L+ E + G +
Sbjct: 20 RPVANESEPLEVKFGLTLQQIIDVDEKNQLLITNIWLSLEWNDYNLKWNESEYG-GVKDL 78
Query: 62 TLPPEFFDNLWHPDPYFLNSKVTEIAELTHKFSSVTLYRNQTVRYSARMHAIIACQMEFQ 121
+ P + LW PD NS E + T + ++V + + Y C+M+
Sbjct: 79 RITP---NKLWKPDVLMYNS-ADEGFDGTFQ-TNVVVKHGGSCLYVPPGIFKSTCKMDIT 133
Query: 122 LYPMDIQSCPIYIESFSY-SNQKVRFRWSEAGVTINPELKLLQ-YHIGQPLRLEETNGYM 179
+P D Q C + S++Y NQ SE+G ++ + + Y IG P + + T Y
Sbjct: 134 WFPFDDQHCDMKFGSWTYDGNQLDLVLNSESGGDLSDFITNGEWYLIGMPGK-KNTIVYA 192
Query: 180 IDKDGNYSRLVVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLDLDAIPGRXXXXXXXX 239
+ Y + + R+ ++ P L+ ++ F L D+ G
Sbjct: 193 CCPE-PYVDVTFTIKIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDS--GEKLTLGVTI 249
Query: 240 XXXXXXFTGLRAD-IPPVAYVKALDLWMAGCMMFVFAALGEFVVV 283
F L A+ IP + L C+MF+ A+ VV
Sbjct: 250 LLSLTVFLNLVAEKIPTTSDAVPLIGTYFNCIMFMVASSVVLTVV 294
>AJ850294-1|CAH64514.1| 539|Tribolium castaneum putative esterase
protein.
Length = 539
Score = 25.0 bits (52), Expect = 1.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 69 DNLWHPDPYFLNSKVTEIAELTHKFSSVTLYRNQTV 104
+ L+H D + N +T + + +K+ LY N TV
Sbjct: 323 EGLYHLDEVYNNQLLTRLDDNWNKYIPAILYYNYTV 358
>AJ850293-1|CAH64513.1| 539|Tribolium castaneum putative esterase
protein.
Length = 539
Score = 25.0 bits (52), Expect = 1.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 69 DNLWHPDPYFLNSKVTEIAELTHKFSSVTLYRNQTV 104
+ L+H D + N +T + + +K+ LY N TV
Sbjct: 323 EGLYHLDEVYNNQLLTRLDDNWNKYIPAILYYNYTV 358
>AJ850292-1|CAH64512.1| 539|Tribolium castaneum putative esterase
protein.
Length = 539
Score = 25.0 bits (52), Expect = 1.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 69 DNLWHPDPYFLNSKVTEIAELTHKFSSVTLYRNQTV 104
+ L+H D + N +T + + +K+ LY N TV
Sbjct: 323 EGLYHLDEVYNNQLLTRLDDNWNKYIPAILYYNYTV 358
>AM292372-1|CAL23184.2| 771|Tribolium castaneum gustatory receptor
candidate 51 protein.
Length = 771
Score = 22.6 bits (46), Expect = 5.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 203 LIQTFAPSSLVVMLSWFSFWLDLDAI 228
L + +A +VV + W +WL DA+
Sbjct: 43 LAKCYACLLMVVKILWVIYWLQDDAL 68
Database: tribolium
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 114,650
Number of sequences in database: 317
Lambda K H
0.325 0.139 0.435
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,427
Number of Sequences: 317
Number of extensions: 3878
Number of successful extensions: 25
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 11
length of query: 418
length of database: 114,650
effective HSP length: 58
effective length of query: 360
effective length of database: 96,264
effective search space: 34655040
effective search space used: 34655040
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 44 (21.8 bits)
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