GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000843-TA|BGIBMGA000843-PA|IPR006202|Neurotransmitter-
gated ion-channel ligand-binding, IPR006028|Gamma-aminobutyric acid A
receptor, IPR006201|Neurotransmitter-gated ion-channel,
IPR006029|Neurotransmitter-gated ion-channel transmembrane region
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    34   0.043
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    27   4.9  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    27   6.5  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    26   8.6  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    26   8.6  

>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 33.9 bits (74), Expect = 0.043
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 55   EEGDDHVTLPPEFFDNLWHPDPYFLNSK--VTEIAELTHKFSSV 96
            E+G D++ L PE ++ L   +P  L ++  VTE  EL HK +++
Sbjct: 1691 EKGFDYIYLTPEAYERLQKENPNILTTEEVVTETGELRHKITTI 1734


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 86  IAELTHKFSSVTLYRNQTVRYSARMHAII-ACQME 119
           ++ELT    ++TL  ++  RY +  HAI+  C++E
Sbjct: 907 VSELTKLSGNITLLESEIDRYVSEWHAILRKCKLE 941


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 283 VKVLDKQYQMNKNKAQ-ESMPRIIPVRLNGDKG 314
           +KVLDK+Y + +NK +  ++ R   +RLNG  G
Sbjct: 82  IKVLDKKYIVKENKVKYVNIERDSMMRLNGFPG 114


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 284 KVLDKQYQMNKNKAQESMPRI 304
           K LDK Y   KNK+ E M RI
Sbjct: 52  KELDKVYSFQKNKSAEVMERI 72


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 286 LDKQYQMNKNKAQESMPRIIPVRLN 310
           LDK   +N NK+Q ++P +   RLN
Sbjct: 159 LDKNNLVNDNKSQSTIPHMTAERLN 183


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.139    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,749,897
Number of Sequences: 5004
Number of extensions: 69264
Number of successful extensions: 196
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 5
length of query: 418
length of database: 2,362,478
effective HSP length: 75
effective length of query: 343
effective length of database: 1,987,178
effective search space: 681602054
effective search space used: 681602054
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)