GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000843-TA|BGIBMGA000843-PA|IPR006202|Neurotransmitter-
gated ion-channel ligand-binding, IPR006028|Gamma-aminobutyric acid A
receptor, IPR006201|Neurotransmitter-gated ion-channel,
IPR006029|Neurotransmitter-gated ion-channel transmembrane region
         (418 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0787 + 6578158-6579287,6579439-6580870,6581087-6581097,658...    33   0.56 

>11_01_0787 + 6578158-6579287,6579439-6580870,6581087-6581097,
            6581525-6582125,6583981-6585054,6585745-6585873,
            6585925-6585963
          Length = 1471

 Score = 32.7 bits (71), Expect = 0.56
 Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 124  PMDIQSCPIYIESFSYSNQKVRFRWSEAGVTINPELKLLQYHIGQPLRLEETNGYMIDKD 183
            P+++   P  +  F     K+R + S   V +  ++   +  IGQ  +L+  +G++IDKD
Sbjct: 1120 PIEVIKLPHLVHLFG--KVKLRKKRSIHAVQVIDDIISNKKSIGQKSKLQTLSGFIIDKD 1177

Query: 184  GNYSRLVVYFRFERQI 199
                +L+V+ R  R++
Sbjct: 1178 SIIPQLMVHMRGLRKV 1193


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.139    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,300,909
Number of Sequences: 37544
Number of extensions: 425903
Number of successful extensions: 1071
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1070
Number of HSP's gapped (non-prelim): 1
length of query: 418
length of database: 14,793,348
effective HSP length: 84
effective length of query: 334
effective length of database: 11,639,652
effective search space: 3887643768
effective search space used: 3887643768
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)