Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000842-TA|BGIBMGA000842-PA|IPR002076|GNS1/SUR4 membrane
protein
         (215 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7377| Best HMM Match : ELO (HMM E-Value=3.6e-06)                   175   3e-44
SB_7376| Best HMM Match : ELO (HMM E-Value=3.3e-07)                    98   4e-21
SB_3799| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.015
SB_14072| Best HMM Match : ELO (HMM E-Value=5.7)                       35   0.059
SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)          29   3.9  
SB_10601| Best HMM Match : MFS_1 (HMM E-Value=0.017)                   29   3.9  
SB_26603| Best HMM Match : SNF (HMM E-Value=0)                         28   6.8  
SB_9539| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.0  

>SB_7377| Best HMM Match : ELO (HMM E-Value=3.6e-06)
          Length = 255

 Score =  175 bits (425), Expect = 3e-44
 Identities = 74/134 (55%), Positives = 93/134 (69%), Gaps = 1/134 (0%)

Query: 59  FFILRKKDEQLTFLHVYHHSTMFSFWWIGIKWVPSGSTFLPAMVNSGIHVLMYTYYGLSV 118
           FFILRKK+ Q++FLHVYHH +M   WW+GIKWV  G +F  AM+N+ IH++MY YYGLS 
Sbjct: 87  FFILRKKNNQISFLHVYHHFSMVCLWWVGIKWVAGGQSFFSAMINAFIHIIMYAYYGLSA 146

Query: 119 FGPTVSQYLWWKKYLTIMQLIQFTCALILGINGIRTGCEFPLWMHYVLIFYMISFIILFG 178
             P +  YLWWKKYLT +QL QF   +  G+  +   C F LWM Y LI YMISF+ILF 
Sbjct: 147 I-PEMRIYLWWKKYLTQLQLTQFCTVMAHGVLSLWAKCRFFLWMQYALIGYMISFLILFS 205

Query: 179 NFYMKAYIAKGSKC 192
           NFY+ AY+ +   C
Sbjct: 206 NFYLHAYLTRKQSC 219


>SB_7376| Best HMM Match : ELO (HMM E-Value=3.3e-07)
          Length = 278

 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 44/98 (44%), Positives = 61/98 (62%), Gaps = 1/98 (1%)

Query: 95  STFLPAMVNSGIHVLMYTYYGLSVFGPTVSQYLWWKKYLTIMQLIQFTCALILGINGI-R 153
           + +  A  NS IHV+MY YYGLS  GP+V +YLWWK+YLT MQLIQF   + + +  +  
Sbjct: 179 TAYFGAACNSFIHVIMYLYYGLSAMGPSVQKYLWWKRYLTKMQLIQFLALIYMAVYALWH 238

Query: 154 TGCEFPLWMHYVLIFYMISFIILFGNFYMKAYIAKGSK 191
            GC    +  +V   Y +S ++LF NFY+  Y+ K SK
Sbjct: 239 DGCGTHKFFQWVQFGYGMSLLVLFSNFYLHTYLKKPSK 276


>SB_3799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 291

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 46  YYFSKLLEFCDTFFFILRKKDEQLTFLHV 74
           Y+ +K +E  DT F ILR K  Q++FLHV
Sbjct: 108 YWLTKKIELMDTVFMILRPKTRQMSFLHV 136


>SB_14072| Best HMM Match : ELO (HMM E-Value=5.7)
          Length = 226

 Score = 34.7 bits (76), Expect = 0.059
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 39  IADAVWWYYFSKLLEFCDTFFFILRKKDEQLTFLHV 74
           I  A+  Y+ +K +E  DT F ILR +  Q++FLH+
Sbjct: 148 IKQALLVYWATKNIELLDTVFMILRHRQRQISFLHL 183


>SB_34187| Best HMM Match : ABC_tran (HMM E-Value=1.49995e-41)
          Length = 1515

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 7/71 (9%)

Query: 88   IKWVPSGSTFLPAMVNSGIHVLMYTYY--GLSVFGPTVSQYLWWKKYLTIMQLIQFTCAL 145
            + W    S F   +  S I  L+  +    +S+ GP      WW   L+ MQ  +   +L
Sbjct: 995  VGWRVYWSYFRAGLPTSAIVALLLYFLLAQVSLIGPN-----WWLSRLSSMQRTEQRSSL 1049

Query: 146  ILGINGIRTGC 156
             LGI G   GC
Sbjct: 1050 TLGIYGTIVGC 1060


>SB_10601| Best HMM Match : MFS_1 (HMM E-Value=0.017)
          Length = 541

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/71 (25%), Positives = 29/71 (40%)

Query: 110 MYTYYGLSVFGPTVSQYLWWKKYLTIMQLIQFTCALILGINGIRTGCEFPLWMHYVLIFY 169
           +Y  +   ++G   + Y +   YL + +L  F     +GI  +      P WM     F 
Sbjct: 24  IYKSFCFFIYGAFGALYPYLPLYLKLFKLSSFQAGTAIGIRPLIQIFGAPFWMTIGEWFR 83

Query: 170 MISFIILFGNF 180
              FI+L G F
Sbjct: 84  KKKFILLLGIF 94


>SB_26603| Best HMM Match : SNF (HMM E-Value=0)
          Length = 518

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 98  LPAMVNSGIHVLMYTYYGLSVFGPTVSQYLWWKKYLTIMQLIQFTCALILGINGIR 153
           +P++V+  +  + YT +  +     +  Y WW  ++ I  LI  +C  I G+  +R
Sbjct: 430 VPSVVSLAVKPVGYTVWDFAKADTKILAYPWW-GHIVIAFLIGSSCLFIPGVFVVR 484


>SB_9539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1642

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 11/94 (11%)

Query: 127 LWWKKYLTIMQLIQFTCALILGINGIRTGCEFP---------LWMHYVLIFYMISFIILF 177
           L W+KY+++  L +F C+ + GI      C F          L    + ++Y++  I+ F
Sbjct: 635 LVWQKYVSVALLSRFLCSDVTGI-AFSLACRFTGRGAHVNSILGPLQLSLYYLLVDILKF 693

Query: 178 GNFYMKAYIAKGSKCMEVRYGQCLDDDETIAAKK 211
             F++  ++A G     + Y   +   + IA  K
Sbjct: 694 LVFFVLIFMAFGFSLRRL-YSNYISTQKYIATNK 726


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.332    0.143    0.490 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,231,845
Number of Sequences: 59808
Number of extensions: 286408
Number of successful extensions: 700
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 690
Number of HSP's gapped (non-prelim): 10
length of query: 215
length of database: 16,821,457
effective HSP length: 79
effective length of query: 136
effective length of database: 12,096,625
effective search space: 1645141000
effective search space used: 1645141000
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 58 (27.5 bits)