Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000842-TA|BGIBMGA000842-PA|IPR002076|GNS1/SUR4 membrane
protein
(215 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb... 73 4e-14
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha... 64 1e-11
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 34 0.014
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 29 0.69
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 27 1.6
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 27 2.8
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 3.7
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 26 3.7
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 26 4.8
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 4.8
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 25 6.4
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom... 25 8.5
>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 72.5 bits (170), Expect = 4e-14
Identities = 56/177 (31%), Positives = 84/177 (47%), Gaps = 21/177 (11%)
Query: 47 YFSKLLEFCDTFFFILRKKDEQLTFLHVYHHSTMFSFWWIGIKWVPSGSTFLPAMVNSGI 106
Y +K LE DT F L+KK L FLH YHH + + S + + N +
Sbjct: 141 YLTKYLELMDTVFLFLKKKP--LAFLHCYHHGITALLCFTQLLGRTSVQWGVIGL-NLYV 197
Query: 107 HVLMYTYYGLSVFGPTVSQYLWWKKYLTIMQLIQFTCALILGINGIRTGCEFPL--WMHY 164
HV+MY+YY L+ G V WWK+++T +Q+IQF LIL G + F W+ +
Sbjct: 198 HVIMYSYYFLAACGRRV----WWKQWVTRVQIIQFVLDLILCYFGTYSHIAFRYFPWLPH 253
Query: 165 V--------LIFY----MISFIILFGNFYMKAYIAKGSKCMEVRYGQCLDDDETIAA 209
V F+ + S++ LF FY+ YI +G+K + + D+ AA
Sbjct: 254 VGDCSGSLFAAFFGCGVLSSYLFLFIGFYINTYIKRGAKKNQRKAAGKADNTSVAAA 310
>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 64.1 bits (149), Expect = 1e-11
Identities = 41/95 (43%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 47 YFSKLLEFCDTFFFILRKKDEQLTFLHVYHHSTMFSFWWIGIKWVPSGSTFLPAMVNSGI 106
Y SK LE DTFF +LRKK L FLH YHH + I S S +L +N +
Sbjct: 121 YISKFLELTDTFFLVLRKK--PLQFLHCYHHGATAVLVYTQIVGRTSIS-WLIIEINLLV 177
Query: 107 HVLMYTYYGLSVFGPTVSQYLWWKKYLTIMQLIQF 141
HV MY YY L G V WKK++T Q++QF
Sbjct: 178 HVTMYYYYYLVAKGIRVP----WKKWVTRFQIVQF 208
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 34.3 bits (75), Expect = 0.014
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 7 YIAVRLLTASFRLR-YSYICEPCRQKYDPDELQIADAVWWYYFSKLLEFCDTFFFIL 62
Y+A ++T+ F L S++ P R D +L +WWY+F+++ TFF +
Sbjct: 214 YLAGLIITSGFFLNSLSFLKIPFRVYLDSHDLTPNLGLWWYFFTEMFNEFRTFFLFV 270
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 28.7 bits (61), Expect = 0.69
Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 97 FLPAMVNSGIHVLMYTYYGLSVFGPTVSQYLWWKKYLTIMQLIQFTCALILGINGIRTGC 156
F + G+ + + ++ V PTVS ++ + + + +I T ++L + G+ G
Sbjct: 247 FFINLPTGGLSLALLIFFLNLVPKPTVSFRVFLRDF-DFVGIITITTGVVLFLVGLNIGS 305
Query: 157 EFPLWMHYVLIFYMISFIILFGNFYMKAY 185
W H ++ Y+I I+ F + +
Sbjct: 306 TTGHWAHANVLCYLIFGILCIAGFVVNEF 334
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 97 FLPAMVNSGIHVLMYTYYGLSVFGPTVSQYLWWKKYLTIMQLIQFTCALILGINGIRTGC 156
F + G+ + + ++ V PTVS ++ + + + ++ T ++L + G+ G
Sbjct: 247 FFINLPTGGLSLALLIFFLNLVPKPTVSFCVFLRDF-DFVGIVTITTGVVLFLLGLNIGS 305
Query: 157 EFPLWMHYVLIFYMISFIILFGNF 180
W H ++ Y+I I+ F
Sbjct: 306 TTGHWAHANVLCYLIFGILCIAGF 329
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 36 ELQIADAVWWYYF 48
E +IAD VW+YYF
Sbjct: 52 EKEIADTVWYYYF 64
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 28 CRQKYDPDELQIADAVWWYYFSKLLEFCDTFFFILRKKD 66
C ++ + A+ ++W Y S ++ +FF+I D
Sbjct: 413 CLSDFEKRKQIFAEFIYWLYNSFIIPILQSFFYITESSD 451
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 159 PLWMHYVLIFYMISFIILFGNFYMKAYI 186
P+ VL+FY+I FI++ + + AY+
Sbjct: 150 PMTYTLVLLFYVIGFIVVASSSTISAYV 177
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 71 FLHVYHHSTMFSFWWIGIKWVPSGSTFLP------AMVNSGIHVLMYTYYGLSVFGPTVS 124
++ V+ S++ +F+ + VP+ P + V++ + L+ + LSV+G +
Sbjct: 30 YIKVFGRSSIVTFFLLCFHLVPNALFLFPWTIITTSFVDANVFTLLSSILILSVYGVEIE 89
Query: 125 QYLWWKKYLTIMQLI 139
+ K+YL Q +
Sbjct: 90 RSWGHKEYLLFCQFL 104
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.8 bits (54), Expect = 4.8
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 19 LRYSYICEPCRQKYDPDELQIADAVWWYYFSKLLEFCDTFFF--ILRKKDEQLTFLHVYH 76
L YS I Y + +I A + F+++L CD+ F ILR D QLT Y
Sbjct: 681 LSYSRILRDIDDIYQRQKHRIDGAKLGFQFTQVL--CDSLIFLNILRLSDAQLTNSSFYS 738
Query: 77 HS 78
++
Sbjct: 739 YA 740
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 62 LRKKDEQLTFLHVYHHSTMFSFWWIGIK 89
L +KDE+ T + H ST+FS+ + +K
Sbjct: 51 LIQKDERYTAVFFAHDSTVFSYLGLSLK 78
>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 233
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 120 GPTVSQYLWWKKYLTIMQLIQFTCALILGINGIRTGCEFP 159
GP+ WKK ++ + T ++ IN + G FP
Sbjct: 167 GPSSIHTNMWKKNPELISTLNSTNTMVAKINSLLRGVSFP 206
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.332 0.143 0.490
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,023,925
Number of Sequences: 5004
Number of extensions: 44266
Number of successful extensions: 103
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 13
length of query: 215
length of database: 2,362,478
effective HSP length: 70
effective length of query: 145
effective length of database: 2,012,198
effective search space: 291768710
effective search space used: 291768710
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 52 (25.0 bits)
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