Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000842-TA|BGIBMGA000842-PA|IPR002076|GNS1/SUR4 membrane
protein
(215 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0821 - 27960414-27961253 62 3e-10
06_03_0992 - 26680555-26680840,26680893-26681279,26681364-266824... 31 0.71
07_03_1153 + 24398122-24398747,24399326-24399542,24399741-244002... 29 2.2
02_05_1227 - 35076047-35076217,35076737-35076797,35077038-350771... 29 2.9
02_05_0285 - 27498946-27499122,27499944-27500108,27500828-275009... 29 2.9
11_06_0370 + 22768977-22769523,22769619-22770642,22770784-227711... 29 3.8
10_08_0661 + 19656669-19656905,19657390-19657869,19659519-19659800 29 3.8
08_02_0189 + 13984892-13984943,13985929-13986480,13986577-139867... 29 3.8
07_03_0284 + 16249497-16249993,16250950-16251069,16251166-162512... 28 5.0
04_03_0858 + 20357519-20357573,20358072-20358119,20360675-203609... 28 5.0
04_04_0839 - 28565732-28565908,28566380-28566544,28566656-285667... 28 6.6
03_01_0432 + 3339235-3339915,3340313-3340561,3341071-3341139,334... 28 6.6
01_06_1760 - 39697079-39697162,39697280-39697340,39697415-396974... 27 8.8
>03_05_0821 - 27960414-27961253
Length = 279
Score = 62.1 bits (144), Expect = 3e-10
Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 16/154 (10%)
Query: 46 YYFSKLLEFCDTFFFILRKKDEQLTFLHVYHHSTMFSFWWIGIKWVPSGSTFLPAMV--N 103
+Y SK+ E DT +L ++ LT LHVYHH+ + + ++ W+ + + +P + N
Sbjct: 125 FYLSKVYELGDTLLILLGRRP--LTLLHVYHHAAVIAMCYL---WLATRQSLMPIALATN 179
Query: 104 SGIHVLMYTYYGLSVFGPTVSQYLWWKKYLTIMQLIQF-----TCALILGINGIRTGCEF 158
+ +HV MY YY G + WK+ +T +Q+ QF A++L + GCE
Sbjct: 180 AAVHVAMYGYYLCCSLG--LRWPPRWKRAVTELQIAQFLFSFAASAVMLWRHFAAGGCEG 237
Query: 159 PLWMHYVLIFYMISFIILFGNFYMKAY-IAKGSK 191
+ +F S + LF +F+ AY AKG K
Sbjct: 238 MAGWAFNAVF-NASLLALFLDFHGAAYAAAKGKK 270
>06_03_0992 -
26680555-26680840,26680893-26681279,26681364-26682441,
26682537-26683083
Length = 765
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 38 QIADAVWWYYFSKLLEFCDTFFFILRKKDEQLTFLHVYH 76
++ + VWW +L+F D +F++R D LH+ +
Sbjct: 447 KVLNDVWWDKVQYILDFTDPIYFMIRAADTDKPCLHLVY 485
>07_03_1153 +
24398122-24398747,24399326-24399542,24399741-24400220,
24400801-24401007,24401112-24401249,24401317-24401538
Length = 629
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 92 PSGSTFLPAMVNSGIHVLMYTYY---GLSVFGPTVSQYLWWKKYLTIMQLIQFTCALILG 148
PS S+ LPA+V G H Y G + T ++++ +++ + QL +F +
Sbjct: 79 PSSSSLLPAVVGGGAHARAAAYSASPGAAELKETFAEWMAEQRWEEMKQLFEFWVRSLDP 138
Query: 149 INGIRTGCEFPLWMHYV 165
+G + L+ HY+
Sbjct: 139 ASGKPNRPDVDLFNHYL 155
>02_05_1227 -
35076047-35076217,35076737-35076797,35077038-35077123,
35077213-35077301,35077685-35077766,35078094-35078136,
35078211-35078284,35078492-35078561,35078747-35078816,
35079275-35079369,35079473-35079549,35080725-35080760
Length = 317
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 82 SFWWIGIKWVPSGSTFLPAMVNSGIHVL 109
S W G++W PSG T A NS I+ +
Sbjct: 164 SMWAFGVRWSPSGKTLAYAGHNSMIYFI 191
>02_05_0285 -
27498946-27499122,27499944-27500108,27500828-27500960,
27501052-27501171,27502436-27502980
Length = 379
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 73 HVYHHSTMFSF-WWI-GIKWVPSGSTFL 98
H+ +TMFSF WWI G WV +G L
Sbjct: 186 HLESANTMFSFIWWIIGFYWVSAGGQVL 213
>11_06_0370 +
22768977-22769523,22769619-22770642,22770784-22771170,
22771216-22771507
Length = 749
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 38 QIADAVWWYYFSKLLEFCDTFFFILRKKDEQLTFLHVYH 76
+I + +WW +++FC+ + ++R D LH+ +
Sbjct: 447 KILNDLWWDKVKYIIDFCEPIYSMIRAADTDKPCLHLIY 485
>10_08_0661 + 19656669-19656905,19657390-19657869,19659519-19659800
Length = 332
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 72 LHVYHHSTMFSFWWIGIKWVPS-----GSTFLP 99
L V HH+ WW+ W+P+ +TFLP
Sbjct: 188 LRVSHHAPAILHWWMDQSWLPTSTVVDNTTFLP 220
>08_02_0189 +
13984892-13984943,13985929-13986480,13986577-13986759,
13986826-13987006,13987238-13987654,13987742-13988128,
13988176-13988467
Length = 687
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 38 QIADAVWWYYFSKLLEFCDTFFFILRKKDEQLTFLHVYH 76
+I + +WW +++FC+ + ++R D LH+ +
Sbjct: 367 KILNDLWWDKVKYIIDFCEPIYSMIRAADTDKPCLHLIY 405
>07_03_0284 +
16249497-16249993,16250950-16251069,16251166-16251298,
16251867-16252031,16253289-16253459
Length = 361
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 73 HVYHHSTMFSF-WWI-GIKWVPSGSTFL 98
H+ +TMFSF WWI G W+ +G L
Sbjct: 170 HLESANTMFSFIWWIIGFYWISAGGQAL 197
>04_03_0858 +
20357519-20357573,20358072-20358119,20360675-20360922,
20361152-20361363,20361480-20361741,20361832-20362143
Length = 378
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 74 VYHHSTMFSFWWIGIKWVPSGS--TFLPAMVNSGIHVLMYTYYGLSVFGPTVSQ 125
V HH ++WW K P+ S + PA+ + G +L+ + + + P + Q
Sbjct: 228 VSHHLPWLTYWWNSQKLFPASSVIAYNPALFSEGDKLLL-SKFAFRTYMPQIRQ 280
>04_04_0839 -
28565732-28565908,28566380-28566544,28566656-28566788,
28566888-28567007,28568361-28568740
Length = 324
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 73 HVYHHSTMFSF-WWI-GIKWVPSG 94
H+ +TMFSF WWI G W+ +G
Sbjct: 131 HLESANTMFSFIWWIIGFYWISAG 154
>03_01_0432 +
3339235-3339915,3340313-3340561,3341071-3341139,
3341292-3341414,3341526-3341738
Length = 444
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 98 LPAM-VNSGIHVLMYTYYGLSVFGPTVSQYLWWKKYLTIMQLIQFTCALILG 148
+P M V SG+HVL +G S FG + L W + + + ++LG
Sbjct: 219 MPFMSVRSGVHVLPREMFGASTFG-IAMKLLRWLPIKMVDRFLLLVARMVLG 269
>01_06_1760 -
39697079-39697162,39697280-39697340,39697415-39697479,
39697579-39697860,39697938-39698012,39698121-39698195,
39698343-39698399,39698653-39698726,39698912-39699055,
39699608-39699662,39700027-39700149,39700276-39700320,
39701068-39701160,39701249-39701662
Length = 548
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 67 EQLTFLHVYHHSTMFSFWWIGIKW 90
EQLT +Y + S WWIG W
Sbjct: 259 EQLTKFILYAEWLILSTWWIGDNW 282
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.332 0.143 0.490
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,182,717
Number of Sequences: 37544
Number of extensions: 248692
Number of successful extensions: 615
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 606
Number of HSP's gapped (non-prelim): 14
length of query: 215
length of database: 14,793,348
effective HSP length: 79
effective length of query: 136
effective length of database: 11,827,372
effective search space: 1608522592
effective search space used: 1608522592
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 58 (27.5 bits)
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