GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000842-TA|BGIBMGA000842-PA|IPR002076|GNS1/SUR4 membrane
protein
         (215 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    24   3.0  
AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinestera...    23   5.3  
AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinestera...    23   5.3  
AJ488492-1|CAD32684.2|  623|Anopheles gambiae acetylcholinestera...    23   5.3  
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    23   7.0  
AY534995-1|AAT07393.1|  461|Anopheles gambiae XK-related protein.      23   7.0  

>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 175 ILFGNFYMKAYIAKGSKCMEVRYGQCLDDDETI 207
           +L G+   ++Y+ + ++    R   C D+DET+
Sbjct: 949 VLSGHGCFRSYLHRFNRASSSRCPACKDEDETV 981


>AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 120 GPTVSQYLWWKKYLTIMQLIQFTCAL 145
           GP + Q  +WKKYL   QL+  T  L
Sbjct: 677 GPRLRQCAFWKKYLP--QLVAATSNL 700


>AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 120 GPTVSQYLWWKKYLTIMQLIQFTCAL 145
           GP + Q  +WKKYL   QL+  T  L
Sbjct: 677 GPRLRQCAFWKKYLP--QLVAATSNL 700


>AJ488492-1|CAD32684.2|  623|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 623

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 120 GPTVSQYLWWKKYLTIMQLIQFTCAL 145
           GP + Q  +WKKYL   QL+  T  L
Sbjct: 563 GPRLRQCAFWKKYLP--QLVAATSNL 586


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 160 LWMHYVLIFYMISFIILF 177
           LW+H++ I  +IS I +F
Sbjct: 10  LWIHFLNITQLISLIFVF 27


>AY534995-1|AAT07393.1|  461|Anopheles gambiae XK-related protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 114 YGLSVFGPTVSQYLWWKKYLTIMQLIQF 141
           YG  V  PT+ Q + W   LT   +  F
Sbjct: 401 YGTFVRNPTIRQSVLWTGLLTCFPIATF 428


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.332    0.143    0.490 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,587
Number of Sequences: 2123
Number of extensions: 10044
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 6
length of query: 215
length of database: 516,269
effective HSP length: 61
effective length of query: 154
effective length of database: 386,766
effective search space: 59561964
effective search space used: 59561964
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 46 (22.6 bits)