GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000842-TA|BGIBMGA000842-PA|IPR002076|GNS1/SUR4 membrane
protein
         (215 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61954-11|AAK29807.1|  274|Caenorhabditis elegans Fatty acid elo...    85   5e-17
Z68749-1|CAA92960.2|  309|Caenorhabditis elegans Hypothetical pr...    83   2e-16
U41011-5|AAA82288.2|  320|Caenorhabditis elegans Fatty acid elon...    81   5e-16
Z68749-3|CAA92958.1|  288|Caenorhabditis elegans Hypothetical pr...    79   3e-15
AF244356-1|AAF70462.1|  288|Caenorhabditis elegans long chain po...    79   3e-15
Z19154-4|CAA79555.1|  291|Caenorhabditis elegans Hypothetical pr...    71   5e-13
AL132949-2|CAB61069.1|  286|Caenorhabditis elegans Hypothetical ...    68   4e-12
Z81058-5|CAB02921.1|  274|Caenorhabditis elegans Hypothetical pr...    60   9e-10
U61954-8|AAK29808.1|  286|Caenorhabditis elegans Fatty acid elon...    46   3e-05
U39993-3|AAK72060.1|  728|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z78059-1|CAH04725.2|  348|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>U61954-11|AAK29807.1|  274|Caenorhabditis elegans Fatty acid
           elongation protein 6 protein.
          Length = 274

 Score = 84.6 bits (200), Expect = 5e-17
 Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 10/153 (6%)

Query: 44  WWYYFSKLLEFCDTFFFILRKKDEQLTFLHVYHHSTMFSFWWIGIKWVPSGSTFLPAMVN 103
           W +  SK+ EF DT F ILRKK   L FLH YHH    ++ ++  +     +T++  M N
Sbjct: 114 WLFVLSKVAEFGDTLFIILRKKP--LMFLHWYHHVLTMNYAFMSFEANLGFNTWITWM-N 170

Query: 104 SGIHVLMYTYYGLSVFGPTVSQYLWWKKYLTIMQLIQF--TCALILGINGIR-TG--CEF 158
             +H +MY YY L  FG  V    W  K +T MQ++QF  T  ++  +  +  TG   + 
Sbjct: 171 FSVHSIMYGYYMLRSFGVKVPA--WIAKNITTMQILQFVITHFILFHVGYLAVTGQSVDS 228

Query: 159 PLWMHYVLIFYMISFIILFGNFYMKAYIAKGSK 191
               ++  +   IS+++LFGNFY ++YI  G K
Sbjct: 229 TPGYYWFCLLMEISYVVLFGNFYYQSYIKGGGK 261


>Z68749-1|CAA92960.2|  309|Caenorhabditis elegans Hypothetical
           protein F56H11.3 protein.
          Length = 309

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 53/161 (32%), Positives = 79/161 (49%), Gaps = 14/161 (8%)

Query: 40  ADAVWWYYF---SKLLEFCDTFFFILRKKDEQLTFLHVYHHSTMFSFWWIGIKWVPSGST 96
           + A +W +    SK +EF DTFF +LRKK   L FLH YHH   F F+       PS  +
Sbjct: 143 SQAEYWLFLTILSKAVEFVDTFFLVLRKKP--LIFLHWYHHMATFVFFCSNYP-TPSSQS 199

Query: 97  FLPAMVNSGIHVLMYTYYGLSVFGPTVSQYLWWKKYLTIMQLIQFTCALI---LGINGIR 153
            +  +VN  +H  MY YY        V   +     +T++QL QF C +    L    + 
Sbjct: 200 RVGVIVNLFVHAFMYPYYFTRSMNIKVPAKI--SMAVTVLQLTQFMCFIYGCTLMYYSLA 257

Query: 154 TG---CEFPLWMHYVLIFYMISFIILFGNFYMKAYIAKGSK 191
           T    C+ P+++ +       S+ +LF NF+ KAY+ +G K
Sbjct: 258 TNQYTCDTPMFVLHSTFALSSSYFVLFANFFHKAYLQRGGK 298


>U41011-5|AAA82288.2|  320|Caenorhabditis elegans Fatty acid
           elongation protein 3 protein.
          Length = 320

 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 12/157 (7%)

Query: 46  YYFSKLLEFCDTFFFILRKKDEQLTFLHVYHHSTMFSFWWIGIK-WVPSGSTFLPAMVNS 104
           +  SKL E  DT F +LRK+   L FLH YHH T+  + W   K    SG  F+   +N 
Sbjct: 125 FAMSKLFELIDTIFIVLRKRP--LIFLHWYHHVTVMIYTWHAYKDHTASGRWFI--WMNY 180

Query: 105 GIHVLMYTYYGLSVFGPTVSQYLWWKKYLTIMQLIQFTCALILGIN--GIRTGCEF--PL 160
           G+H LMY+YY L      + + +     +T +QL Q    +I+G+    I++  E+    
Sbjct: 181 GVHALMYSYYALRSLKFRLPKQM--AMVVTTLQLAQMVMGVIIGVTVYRIKSSGEYCQQT 238

Query: 161 WMHYVLIFYM-ISFIILFGNFYMKAYIAKGSKCMEVR 196
           W +  L F +  ++ +LF NF+  AY+ K ++  EV+
Sbjct: 239 WDNLGLCFGVYFTYFLLFANFFYHAYVKKNNRYTEVK 275


>Z68749-3|CAA92958.1|  288|Caenorhabditis elegans Hypothetical
           protein F56H11.4 protein.
          Length = 288

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 11/155 (7%)

Query: 43  VWWYYFSKLLEFCDTFFFILRKKDEQLTFLHVYHHSTMFSFWWIGIKWVPSGSTFLPAMV 102
           VW +  SKL E  DT F +LRK+   L FLH YHH     + W      P G       +
Sbjct: 127 VWLFMASKLFELVDTIFLVLRKR--PLMFLHWYHHILTMIYAWYSHPLTP-GFNRYGIYL 183

Query: 103 NSGIHVLMYTYYGLSVFGPTVSQYLWWKKYLTIMQLIQF--TCALI--LG--INGIRTGC 156
           N  +H  MY+YY L      V  ++   + +T +Q++QF  +CA++  LG  ++     C
Sbjct: 184 NFVVHAFMYSYYFLRSMKIRVPGFI--AQAITSLQIVQFIISCAVLAHLGYLMHFTNANC 241

Query: 157 EFPLWMHYVLIFYMISFIILFGNFYMKAYIAKGSK 191
           +F   +  + +F   +++ LF NF++++Y+ +G K
Sbjct: 242 DFEPSVFKLAVFMDTTYLALFVNFFLQSYVLRGGK 276


>AF244356-1|AAF70462.1|  288|Caenorhabditis elegans long chain
           polyunsaturated fattyacid elongation enzyme protein.
          Length = 288

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 11/155 (7%)

Query: 43  VWWYYFSKLLEFCDTFFFILRKKDEQLTFLHVYHHSTMFSFWWIGIKWVPSGSTFLPAMV 102
           VW +  SKL E  DT F +LRK+   L FLH YHH     + W      P G       +
Sbjct: 127 VWLFMASKLFELVDTIFLVLRKR--PLMFLHWYHHILTMIYAWYSHPLTP-GFNRYGIYL 183

Query: 103 NSGIHVLMYTYYGLSVFGPTVSQYLWWKKYLTIMQLIQF--TCALI--LG--INGIRTGC 156
           N  +H  MY+YY L      V  ++   + +T +Q++QF  +CA++  LG  ++     C
Sbjct: 184 NFVVHAFMYSYYFLRSMKIRVPGFI--AQAITSLQIVQFIISCAVLAHLGYLMHFTNANC 241

Query: 157 EFPLWMHYVLIFYMISFIILFGNFYMKAYIAKGSK 191
           +F   +  + +F   +++ LF NF++++Y+ +G K
Sbjct: 242 DFEPSVFKLAVFMDTTYLALFVNFFLQSYVLRGGK 276


>Z19154-4|CAA79555.1|  291|Caenorhabditis elegans Hypothetical
           protein C40H1.4 protein.
          Length = 291

 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 15/159 (9%)

Query: 42  AVWWYYF--SKLLEFCDTFFFILRKKDEQLTFLHVYHHSTMFSFW-WIGIKWVPSGSTFL 98
           A W + F  SK++E  DT F ILRK+   L FLH YHH+ +  +    G +   +G  ++
Sbjct: 131 AFWSFAFALSKIVELGDTMFIILRKRP--LIFLHYYHHAAVLIYTVHSGAEHTAAGRFYI 188

Query: 99  PAMVNSGIHVLMYTYYGLSVFGPTVSQYLWWKKYLTIMQLIQFTCALILG--INGIRTGC 156
             ++N   H LMYTYY +S  G  + +  W    +T +Q  Q    + +   +  ++T  
Sbjct: 189 --LMNYFAHSLMYTYYTVSAMGYRLPK--WVSMTVTTVQTTQMLAGVGITWMVYKVKTEY 244

Query: 157 EFPLWMH----YVLIFYMISFIILFGNFYMKAYIAKGSK 191
           + P        Y+     ++F ILF  F++KAYI K SK
Sbjct: 245 KLPCQQSVANLYLAFVIYVTFAILFIQFFVKAYIIKSSK 283


>AL132949-2|CAB61069.1|  286|Caenorhabditis elegans Hypothetical
           protein Y53F4B.2 protein.
          Length = 286

 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 14/158 (8%)

Query: 46  YYFSKLLEFCDTFFFILRKKDEQLTFLHVYHHSTMFSF-WWIGIKWVPSGSTFLPAMVNS 104
           +  SK+ EF DT F +LRK+   + FLH YHH+ +    W   I+    G  F+   +N 
Sbjct: 134 FALSKIAEFGDTMFLVLRKRP--VIFLHWYHHAVVLILSWHAAIELTAPGRWFI--FMNY 189

Query: 105 GIHVLMYTYYGLSVFG----PTVSQYLWWKKYLTIMQLIQFTC-ALILGINGIRTGCEFP 159
            +H +MYTYY ++  G      VS  + + + L ++  +  +C  L L +NG    C+  
Sbjct: 190 LVHSIMYTYYAITSIGYRLPKIVSMTVTFLQTLQMLIGVSISCIVLYLKLNGEM--CQ-Q 246

Query: 160 LWMHYVLIFYMI-SFIILFGNFYMKAYIAKGSKCMEVR 196
            + +  L F +  SF++LF +F+  AY+ K  K  +V+
Sbjct: 247 SYDNLALSFGIYASFLVLFSSFFNNAYLVKKDKKPDVK 284


>Z81058-5|CAB02921.1|  274|Caenorhabditis elegans Hypothetical
           protein F11E6.5 protein.
          Length = 274

 Score = 60.5 bits (140), Expect = 9e-10
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 12/154 (7%)

Query: 44  WWYYFSKLLEFCDTFFFILRKKDEQLTFLHVYHHSTMFSFWWIGIKWVPSGSTFLPAMVN 103
           W +  SK  E  DT F +LRKK   + F+H YHH+  F +  +      + + +  A+ N
Sbjct: 118 WAFVMSKAPELGDTMFLVLRKKP--VIFMHWYHHALTFVYAVVTYSEHQAWARWSLAL-N 174

Query: 104 SGIHVLMYTYYGLSVFGPTVSQYLWWKKYLTIMQLIQF--TCALILGINGIRT-----GC 156
             +H +MY Y+ +        + +   K++T +Q++QF  +C +   +  I++     GC
Sbjct: 175 LAVHTVMYFYFAVRALNIQTPRPV--AKFITTIQIVQFVISCYIFGHLVFIKSADSVPGC 232

Query: 157 EFPLWMHYVLIFYMISFIILFGNFYMKAYIAKGS 190
                +  +     IS++ LF  F+ KAYI K S
Sbjct: 233 AVSWNVLSIGGLMYISYLFLFAKFFYKAYIQKRS 266


>U61954-8|AAK29808.1|  286|Caenorhabditis elegans Fatty acid
           elongation protein 5 protein.
          Length = 286

 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 14/157 (8%)

Query: 43  VWWYYFSKLLEFCDTFFFILRKKDEQLTFLHVYHHSTMFSFWWIGIKWVPSGSTFLPAMV 102
           ++ +  SK+ E  DT F +LRK+   L F+H YHH+ +  ++ +      +        +
Sbjct: 119 IFLWVISKIPELLDTVFIVLRKR--PLIFMHWYHHA-LTGYYALVCYHEDAVHMVWVVWM 175

Query: 103 NSGIHVLMYTYYGLSVFGPTVSQYLWWKKYLTIMQLIQFTCALILGIN--------GIRT 154
           N  IH  MY YY L      +   +   + +T  Q++QF  A+   ++        G+  
Sbjct: 176 NYIIHAFMYGYYLLKSLKVPIPPSV--AQAITTSQMVQFAVAIFAQVHVSYKHYVEGVE- 232

Query: 155 GCEFPLWMHYVLIFYMISFIILFGNFYMKAYIAKGSK 191
           G  +      +  F + ++  L+  FY + Y+  G K
Sbjct: 233 GLAYSFRGTAIGFFMLTTYFYLWIQFYKEHYLKNGGK 269


>U39993-3|AAK72060.1|  728|Caenorhabditis elegans Hypothetical
           protein F47E1.4 protein.
          Length = 728

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 116 LSVFGPTVSQYLWWKKYLTIMQLIQFTCALILGINGIRTGCEFPLWMHYVLIFYMISFII 175
           +S+FG   S  +W     T  ++   TC    G   I       +WMH  L++  + FI 
Sbjct: 637 ISLFGTLPSSIIWGLVIDTACRVWDKTCNGANGSCSIYDSDHLRIWMH--LLYVGVRFIS 694

Query: 176 LFGNFYM 182
           L  + Y+
Sbjct: 695 LLSDIYV 701


>Z78059-1|CAH04725.2|  348|Caenorhabditis elegans Hypothetical
           protein C34B4.5 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 8/129 (6%)

Query: 35  DELQIADAVWWYYFSKLLEFCDTFFFILRKKDEQLTFLHVYHHSTMFSFWWIGIKWVPSG 94
           D L  ++  W +YF  LL    T    L      +  + +++H     F+W  ++   + 
Sbjct: 30  DTLPESEKNWMFYFVILLFVLSTVTATLLTASFLIMAVFLWNHLKPMKFFWFLLQL--TI 87

Query: 95  STFLPAMVNSGIHVLMYTYYGLSVFGPTVSQYLWWKKYLTIMQLIQFTCALILGINGIRT 154
           S F+ + +N   +V        ++F     Q++    YL +  +I F    IL  N +  
Sbjct: 88  SAFILSTLNLVFNV------PATLFSVATEQFVQTNLYLIMSYVIDFCLHSILFSNFVMA 141

Query: 155 GCEFPLWMH 163
              F ++ H
Sbjct: 142 IQRFAVFFH 150


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.332    0.143    0.490 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,561,760
Number of Sequences: 27539
Number of extensions: 239643
Number of successful extensions: 698
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 664
Number of HSP's gapped (non-prelim): 11
length of query: 215
length of database: 12,573,161
effective HSP length: 78
effective length of query: 137
effective length of database: 10,425,119
effective search space: 1428241303
effective search space used: 1428241303
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 58 (27.5 bits)