GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000842-TA|BGIBMGA000842-PA|IPR002076|GNS1/SUR4 membrane
protein
         (215 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   3.8  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 1   MAALNAYIAVRLLTASFRLRYSYICEPCR 29
           ++ +++Y++V  + A    RY  IC P R
Sbjct: 120 VSEMSSYVSVLTIVAFSMERYLAICHPLR 148



 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/20 (35%), Positives = 14/20 (70%)

Query: 157 EFPLWMHYVLIFYMISFIIL 176
           +FPL+    +IF++I  +I+
Sbjct: 209 DFPLYELSTIIFFLIPMLII 228


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 124 SQYLWWKKYLTIMQLIQFTCALILGIN 150
           + YLW  K  TI+ +++ T  L   +N
Sbjct: 140 NHYLWLYKDKTILYMVKLTLKLSCAMN 166


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 105 GIHVLMYTYYGLSVFGPTV 123
           G HV +YT  GL+V G  V
Sbjct: 347 GNHVKLYTKQGLNVLGNIV 365


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength
          rhodopsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 31 KYDPDELQIADAVWWYY 47
          K  PD L + DA W+ Y
Sbjct: 28 KVPPDMLHLIDANWYQY 44


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.332    0.143    0.490 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,829
Number of Sequences: 429
Number of extensions: 2655
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 5
length of query: 215
length of database: 140,377
effective HSP length: 55
effective length of query: 160
effective length of database: 116,782
effective search space: 18685120
effective search space used: 18685120
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 42 (21.0 bits)