Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000842-TA|BGIBMGA000842-PA|IPR002076|GNS1/SUR4 membrane
protein
(215 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g06460.1 68416.m00748 GNS1/SUR4 membrane family protein simil... 88 4e-18
At3g06470.1 68416.m00749 GNS1/SUR4 membrane family protein simil... 83 1e-16
At1g74280.1 68414.m08602 hydrolase, alpha/beta fold family prote... 32 0.34
At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger) fa... 31 0.78
At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger) fa... 30 1.0
At3g03230.1 68416.m00319 esterase/lipase/thioesterase family pro... 29 1.8
At2g13610.1 68415.m01500 ABC transporter family protein 29 1.8
At2g24650.1 68415.m02944 transcriptional factor B3 family protei... 29 2.4
At1g74300.1 68414.m08604 esterase/lipase/thioesterase family pro... 29 2.4
At1g74290.1 68414.m08603 esterase/lipase/thioesterase family pro... 29 2.4
At5g11320.2 68418.m01322 flavin-containing monooxygenase family ... 29 3.2
At5g11320.1 68418.m01321 flavin-containing monooxygenase family ... 29 3.2
At1g75000.1 68414.m08707 GNS1/SUR4 membrane family protein conta... 28 4.2
At4g13260.1 68417.m02075 flavin-containing monooxygenase / FMO (... 28 5.5
At5g61730.1 68418.m07746 ABC transporter family protein contains... 27 7.3
At1g04180.1 68414.m00408 flavin-containing monooxygenase family ... 27 9.7
>At3g06460.1 68416.m00748 GNS1/SUR4 membrane family protein similar
to SP|P25358 Elongation of fatty acids protein 2 (GNS1
protein) (V-SNARE bypass mutant gene 2 protein)
{Saccharomyces cerevisiae}; contains Pfam profile
PF01151: GNS1/SUR4 family
Length = 298
Score = 88.2 bits (209), Expect = 4e-18
Identities = 52/148 (35%), Positives = 78/148 (52%), Gaps = 16/148 (10%)
Query: 46 YYFSKLLEFCDTFFFILRKKDEQLTFLHVYHHSTMFSFWWIGIKWVPSGSTFLPA--MVN 103
+Y SK+LEF DT IL K ++L+FLHVYHH+T+ ++ W+ + + P ++N
Sbjct: 124 FYLSKILEFVDTLLIILNKSIQRLSFLHVYHHATVVILCYL---WLRTRQSMFPVGLVLN 180
Query: 104 SGIHVLMYTYYGLSVFGPTVSQYLWWKKYLTIMQLIQFTCALILGI------NGIRTGCE 157
S +HV+MY YY L G WKK +T Q++QF + LG + +GC
Sbjct: 181 STVHVIMYGYYFLCAIGSRPK----WKKLVTNFQMVQFAFGMGLGAAWMLPEHYFGSGCA 236
Query: 158 FPLWMHYVLIFYMISFIILFGNFYMKAY 185
+W Y + S + LF NF+ K Y
Sbjct: 237 -GIWTVYFNGVFTASLLALFYNFHSKNY 263
>At3g06470.1 68416.m00749 GNS1/SUR4 membrane family protein similar
to SP|P39540 Elongation of fatty acids protein 1
{Saccharomyces cerevisiae}; contains Pfam profile
PF01151: GNS1/SUR4 family
Length = 278
Score = 83.4 bits (197), Expect = 1e-16
Identities = 53/155 (34%), Positives = 83/155 (53%), Gaps = 19/155 (12%)
Query: 46 YYFSKLLEFCDTFFFILRKKDEQLTFLHVYHHSTMFSFWWIGIKWVPSGSTFLP-AMV-N 103
+Y SK+LEF DT IL K ++L+FLHVYHH+T+ ++ W+ + + P A+V N
Sbjct: 127 FYLSKILEFGDTILIILGKSIQRLSFLHVYHHATVVVMCYL---WLRTRQSMFPIALVTN 183
Query: 104 SGIHVLMYTYYGLSVFGPTVSQYLWWKKYLTIMQLIQFTCALILGING-------IRTGC 156
S +HV+MY YY L G WK+ +T Q++QF + G++G +GC
Sbjct: 184 STVHVIMYGYYFLCAVGSRPK----WKRLVTDCQIVQFVFS--FGLSGWMLREHLFGSGC 237
Query: 157 EFPLWMHYVLIFYMISFIILFGNFYMKAYIAKGSK 191
+W + S + LF NF+ K Y+ K ++
Sbjct: 238 T-GIWGWCFNAAFNASLLALFSNFHSKNYVKKPTR 271
>At1g74280.1 68414.m08602 hydrolase, alpha/beta fold family protein
contains Pfam profile PF00561: hydrolase, alpha/beta
fold family
Length = 372
Score = 31.9 bits (69), Expect = 0.34
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 46 YYFSKLLEFCDTFFFILRKKDEQLTFLHVYHHSTMFSFWWIGIKWVPSGS 95
YY+ L T F ++K +QL + V H++ +WW KW P S
Sbjct: 191 YYWKNLPLNVSTEGFNFQQKRDQLA-VRVAHYTPWLIYWWNTQKWFPGSS 239
>At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q06003 Goliath
protein (G1 protein) {Drosophila melanogaster}; contains
Pfam profile PF00097: Zinc finger, C3HC4 type (RING
finger)
Length = 381
Score = 30.7 bits (66), Expect = 0.78
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 73 HVYHHSTMFSF-WW-IGIKWVPSGSTFLPAMVNSGIHVLMYTYYGLSVF 119
H+ +TM SF WW IG WV SG L A + ++ L + G VF
Sbjct: 185 HLESANTMISFIWWVIGFYWVSSGGQEL-AQGSPQLYWLCIVFLGFDVF 232
>At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q9WTV7 RING finger
protein 12 (LIM domain interacting RING finger protein)
{Mus musculus}; contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 390
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 73 HVYHHSTMFSF-WWI-GIKWVPSGSTFLPAMVNSGIHVLMYTYYGLSVF 119
H+ +TMFSF WWI G WV +G L + + ++ L + G VF
Sbjct: 205 HLESANTMFSFIWWIIGFYWVSAGGQTL-SSDSPQLYWLCIIFLGFDVF 252
>At3g03230.1 68416.m00319 esterase/lipase/thioesterase family
protein contains Interpro entry IPR000379
Length = 333
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 68 QLTFLHVYHHSTMFSFWWIGIKWVPS 93
QLT L V H+S +WW+ KW P+
Sbjct: 186 QLT-LRVAHYSPWLLYWWMTQKWFPN 210
>At2g13610.1 68415.m01500 ABC transporter family protein
Length = 649
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 163 HYVLIFYMISFIILFGNFYMKAYIAKGSKCMEVRYGQCLDDDETI 207
+++ + Y+ F F F + + +K +KC+E +G+CL +E +
Sbjct: 559 YWIFMHYISLFKYPFEGFLINEF-SKSNKCLEYGFGKCLVTEEDL 602
>At2g24650.1 68415.m02944 transcriptional factor B3 family protein low
similarity to reproductive meristem gene 1 from [Brassica
oleracea var. botrytis] GI:3170424, [Arabidopsis
thaliana] GI:13604227; contains Pfam profile PF02362: B3
DNA binding domain
Length = 1440
Score = 29.1 bits (62), Expect = 2.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 189 GSKCMEVRYGQCLDDDETIAAKK 211
G C E++YG C D++ + KK
Sbjct: 1043 GPSCCEIQYGSCSDEERNLEKKK 1065
>At1g74300.1 68414.m08604 esterase/lipase/thioesterase family
protein low similarity to
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
[Rhodococcus sp. RHA1] GI:8978311; contains Interpro
entry IPR000379
Length = 346
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 31 KYDPDELQ----IADAVWWYYFSKLLEFCDTFFFILRKKDEQLTFLHVYHHSTMFSFWWI 86
KY P L +A V +Y+ + L F + +K+D+ + V H++ +WW
Sbjct: 156 KYTPHRLAGVTLVAPVVNYYWRNLPLNISTEGFNLQQKRDQWA--VRVAHYAPWLIYWWN 213
Query: 87 GIKWVPSGS 95
W P S
Sbjct: 214 TQNWFPGSS 222
>At1g74290.1 68414.m08603 esterase/lipase/thioesterase family
protein contains Interpro entry IPR000379
esterase/lipase/thioesterase family
Length = 371
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 46 YYFSKLLEFCDTFFFILRKKDEQLTFLHVYHHSTMFSFWWIGIKWVPSGS 95
YY+ L T F ++K +Q + V H++ +WW KW P S
Sbjct: 193 YYWRNLPLNVSTEGFNFQQKRDQWA-VRVAHYAPWLIYWWNTQKWFPGSS 241
>At5g11320.2 68418.m01322 flavin-containing monooxygenase family
protein / FMO family protein similar to
flavin-containing monooxygenases YUCCA [gi:16555352],
YUCCA2 [gi:16555354], and YUCCA3 [gi:16555356] from
Arabidopsis thaliana
Length = 357
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 98 LPAMV-NSGIHVLMYTYYGLSVFGPTVSQYLWW-----KKYLTIMQLIQFTCALILGING 151
LP MV + +HVL ++GLS FG ++ W+ K+L ++ +LG+
Sbjct: 201 LPHMVVRNSVHVLPRDFFGLSTFGIAMTLLKWFPLKLVDKFLLLLANSTLGNTDLLGLRR 260
Query: 152 IRTG 155
+TG
Sbjct: 261 PKTG 264
>At5g11320.1 68418.m01321 flavin-containing monooxygenase family
protein / FMO family protein similar to
flavin-containing monooxygenases YUCCA [gi:16555352],
YUCCA2 [gi:16555354], and YUCCA3 [gi:16555356] from
Arabidopsis thaliana
Length = 411
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 98 LPAMV-NSGIHVLMYTYYGLSVFGPTVSQYLWW-----KKYLTIMQLIQFTCALILGING 151
LP MV + +HVL ++GLS FG ++ W+ K+L ++ +LG+
Sbjct: 201 LPHMVVRNSVHVLPRDFFGLSTFGIAMTLLKWFPLKLVDKFLLLLANSTLGNTDLLGLRR 260
Query: 152 IRTG 155
+TG
Sbjct: 261 PKTG 264
>At1g75000.1 68414.m08707 GNS1/SUR4 membrane family protein contains
Pfam profile PF01151: GNS1/SUR4 family
Length = 281
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 46 YYFSKLLEFCDTFFFILRKKDEQLTFLHVYHHSTM--FSFWWI 86
+Y S+ L TFF ++R++ +L+F + + S++ SF W+
Sbjct: 133 FYLSRFLHLFRTFFSVIRRR--KLSFFQLINQSSLLCISFLWL 173
>At4g13260.1 68417.m02075 flavin-containing monooxygenase / FMO
(YUCCA2) identical to gi:16555354
Length = 415
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 98 LPAMV-NSGIHVLMYTYYGLSVFGPTVSQYLWWKKYLTIMQLIQFTCALILG 148
LP++V +HVL G+S FG + S W+ ++ L++ + L+LG
Sbjct: 218 LPSLVVRDSVHVLPQEMLGISTFGISTSLLKWFPVHVVDRFLLRMS-RLVLG 268
>At5g61730.1 68418.m07746 ABC transporter family protein contains
Pfam profile: PF00005 ABC transporter
Length = 940
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 123 VSQYLWWKKYLTIMQLIQFTCALILGINGIRTGCEFPLWMHYVLI---FYMISFIILFGN 179
V + +W +L ++ F +L L + G+ EF L +VL+ F++ F ++
Sbjct: 267 VYESAYWLSWLIWEGILTFVSSLFLVLFGMMFQFEFFLKNSFVLVFLLFFLFQFNMIGLA 326
Query: 180 FYMKAYIAKGSKCMEVRY 197
F + + I+K S V +
Sbjct: 327 FALSSIISKSSSATTVGF 344
>At1g04180.1 68414.m00408 flavin-containing monooxygenase family
protein / FMO family protein similar to
flavin-containing monooxygenases YUCCA [gi:16555352],
YUCCA2 [gi:16555354], and YUCCA3 [gi:16555356] from
Arabidopsis thaliana; contains Pfam profile PF00743
Length = 421
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 101 MVNSGIHVLMYTYYGLSVFGPTVSQYLWWKKYLTIMQLIQFTCALILG 148
+V S +HVL G S FG +V W +L + +L+ L+LG
Sbjct: 218 VVRSSVHVLPREIMGKSTFGISVMMMKWLPLWL-VDKLLLILSWLVLG 264
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.332 0.143 0.490
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,194,638
Number of Sequences: 28952
Number of extensions: 217982
Number of successful extensions: 599
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 16
length of query: 215
length of database: 12,070,560
effective HSP length: 78
effective length of query: 137
effective length of database: 9,812,304
effective search space: 1344285648
effective search space used: 1344285648
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 57 (27.1 bits)
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