GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000841-TA|BGIBMGA000841-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR001314|Peptidase S1A, chymotrypsin,
IPR009003|Peptidase, trypsin-like serine and cysteine
         (272 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    29   0.94 
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    27   2.9  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    26   5.0  
SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces p...    26   6.7  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    26   6.7  
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    25   8.8  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.8  

>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 238 SFGRGCGQPLSPSVFAATYSPANWNFIKE 266
           S+    G+PL P +F+  Y    WN++ E
Sbjct: 360 SYSALVGRPLLPPLFSIGYHQCRWNYVSE 388


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 88  VDPTTVVLRAGSTFRKNGTIIPIALVASHPEYDDPAFDKDVAVMKTVKPMEFGETMQ 144
           +DP+ +    G+ FR+     P A  A+HP   D A + ++A ++T K +  G+T Q
Sbjct: 367 LDPSYIDQFEGNFFRRTKKPTPSATPAAHP---DTARENELAAIQT-KGISAGKTEQ 419


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 120 DDPAFDK--DVAVMKTVKPMEFGETMQPVALPALG--AKLEPNSEIVVSGWGRTVQGAPT 175
           +DP  D+  D+ + +    + FGE+   V +P  G  A      E+        +   PT
Sbjct: 2   EDPKSDEKFDIGISEKNLDVGFGESSS-VDVPVKGRFASFLKKLELSSGPEKENIDLRPT 60

Query: 176 IPDRLMNVTLDVVSHFKCN 194
            PDR     LD++  + CN
Sbjct: 61  PPDRRHYSALDIIYLWSCN 79


>SPAC3G6.10c |||GARP complex subunit Vps51 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 159

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 99  STFRK---NGTIIPI---ALVASHPEYDDPAFDKDVAVMKTVKPMEFGETMQ 144
           ST RK   + T+ P+   AL    PE+ DP FD +  V K ++     E +Q
Sbjct: 26  STTRKPSSSNTVSPVEETALDKVDPEFSDPNFDSNAYVSKFMEKATPAELLQ 77


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 163 VSGWGRTVQGAPTIPDRLMNVTLD 186
           VS WG  ++ AP   ++L+N T+D
Sbjct: 321 VSEWGIPLESAPDALEKLINYTVD 344


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 212 FLGGKGTCQGDSGGAAVQNGTVMGIVSFGRGC 243
           +  G+  C    GG  +   +++ IV FGR C
Sbjct: 430 YAAGEAACVSVHGGNRLGANSLLDIVVFGRAC 461


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 144 QPVALPALGAKLEPNSEIVVSGWGR--TVQGAPTIPDRL-MNVTLDVVSHF-KCNLSYYL 199
           QP +L  LG K +  SE+++S         GAP + + +  N T +  S F KC   + +
Sbjct: 669 QPTSLLVLGCKAKNVSELILSYLPEKPIPDGAPIVTNVVETNKTNEAPSSFRKCLQQFLV 728

Query: 200 YLT 202
           +LT
Sbjct: 729 FLT 731


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,197,463
Number of Sequences: 5004
Number of extensions: 48352
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 9
length of query: 272
length of database: 2,362,478
effective HSP length: 72
effective length of query: 200
effective length of database: 2,002,190
effective search space: 400438000
effective search space used: 400438000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)