GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000841-TA|BGIBMGA000841-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR001314|Peptidase S1A, chymotrypsin,
IPR009003|Peptidase, trypsin-like serine and cysteine
         (272 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0291 + 21637700-21638164                                         31   1.3  
07_03_0021 - 12521013-12521116,12521476-12521533,12522418-125225...    28   7.0  
06_01_0321 + 2328932-2328963,2329084-2329243,2329388-2329576,233...    28   7.0  

>02_04_0291 + 21637700-21638164
          Length = 154

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)

Query: 203 DNMWCAGNFFLGGKGTCQGDSGGAAVQNGTVMG 235
           D +   G   LGG G+C G+ GGA   NG   G
Sbjct: 99  DRLGSGGVRGLGGAGSCGGEGGGAGSDNGEGSG 131


>07_03_0021 -
           12521013-12521116,12521476-12521533,12522418-12522525,
           12522609-12522702,12522875-12523035,12523095-12523169,
           12523431-12523490,12523589-12523648,12523935-12523982,
           12524065-12524113,12524368-12524432,12524522-12524605,
           12524710-12524729,12524777-12524801,12524993-12525052,
           12525130-12525211,12525344-12525447,12525662-12525723,
           12525840-12525996
          Length = 491

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 187 VVSHFKCNLSYYLYLTDNMWCA 208
           VV+ F+CN+S  L LT+  W A
Sbjct: 203 VVTQFRCNISKALVLTNRKWTA 224


>06_01_0321 +
           2328932-2328963,2329084-2329243,2329388-2329576,
           2330406-2330517,2331395-2331474,2332022-2332132,
           2332580-2332666,2332979-2333260,2333804-2333965
          Length = 404

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 70  GIILSQDWIMTAAHCAQNVDPTTVVLRAGSTFRKNGTII 108
           G I+S+DWI+ +    + VD    ++  G  +RKN  ++
Sbjct: 122 GTIVSKDWILESHSQRKLVDIEPYLMHVGKPWRKNKELV 160


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.135    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,136,514
Number of Sequences: 37544
Number of extensions: 357573
Number of successful extensions: 787
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 3
length of query: 272
length of database: 14,793,348
effective HSP length: 81
effective length of query: 191
effective length of database: 11,752,284
effective search space: 2244686244
effective search space used: 2244686244
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)