Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000841-TA|BGIBMGA000841-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR001314|Peptidase S1A, chymotrypsin,
IPR009003|Peptidase, trypsin-like serine and cysteine
(272 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 114 7e-26
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 99 2e-21
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 51 8e-07
Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical pr... 38 0.006
X58982-1|CAA41731.1| 498|Caenorhabditis elegans degenerin protein. 31 0.67
U58726-8|AAB00580.3| 768|Caenorhabditis elegans Mechanosensory ... 31 0.67
U53669-1|AAC47265.1| 768|Caenorhabditis elegans MEC-4 protein. 31 0.67
Z81581-2|CAD56595.1| 672|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z81581-1|CAD56594.1| 655|Caenorhabditis elegans Hypothetical pr... 30 2.0
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 114 bits (274), Expect = 7e-26
Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 13/234 (5%)
Query: 38 TADSRIVGGHETTIEDHPYQVSFIVNNSYF-CGGIILSQDWIMTAAHC-AQNVDPTTVVL 95
T D R++GG E++ P+ V + + CGG ++ ++++TAAHC A++ PT+ +
Sbjct: 53 TLDHRLIGGSESSPHSWPWTVQLLSRLGHHRCGGSLIDPNFVLTAAHCFAKDRRPTSYSV 112
Query: 96 RAGSTFRKNGTIIPIALVASHPEYDDP-AFDKDVAVMKTVKPMEFGETMQPVALPALGAK 154
R G +G+ + V+ HP Y+ D A+M+ P+ T +P+ LP+L A
Sbjct: 113 RVGGHRSGSGSPHRVTAVSIHPWYNIGFPSSYDFAIMRIHPPVNTSTTARPICLPSLPAV 172
Query: 155 LEPNSEIVVSGWGRTVQGAPTIPDRLMNVTLDVVSHFKCN-LSYYL--YLTDNMWCAGNF 211
N VV+GWG T++G+ L + + ++S C+ L Y+ +M CAG +
Sbjct: 173 --ENRLCVVTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCAG-Y 229
Query: 212 FLGGKGTCQGDSGGAAV--QNG--TVMGIVSFGRGCGQPLSPSVFAATYSPANW 261
G +CQGDSGG + ++G + G+VS+G GC +P P V+ +S + W
Sbjct: 230 SYGKIDSCQGDSGGPLMCARDGHWELTGVVSWGIGCARPGMPGVYGNVHSASTW 283
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 99 bits (238), Expect = 2e-21
Identities = 69/236 (29%), Positives = 114/236 (48%), Gaps = 20/236 (8%)
Query: 41 SRIVGGHETTIEDHPYQVSFI--VNNSYFCGGIILSQDWIMTAAHCAQN---VDPTTVVL 95
+R+VGG ET P+ + ++ CG IL + ++TAAHC + V VV+
Sbjct: 25 ARVVGGFETVPGAFPWTAALRNKATKAHHCGASILDKTHLITAAHCFEEDERVSSYEVVV 84
Query: 96 RAGSTFRKNGT--IIPIALVASHPEYDDPAFDKDVAVMKTVKP-MEFGETMQPVALPALG 152
+ +G I + + +P Y D F D+A+++ P +EF E QP+ LP+
Sbjct: 85 GDWDNNQTDGNEQIFYLQRIHFYPLYKD-IFSHDIAILEIPYPGIEFNEYAQPICLPSKD 143
Query: 153 AKLEPNSEIVVSGWGRTVQGAPTIPDRLMNVTLDVVSHFKCNLSYYLY--LTDNMWCAGN 210
P + VVSGWG +RL + +++ F C S +Y ++ + +CAG
Sbjct: 144 FVYTPGRQCVVSGWGSM---GLRYAERLQAALIPIINRFDCVNSSQIYSSMSRSAFCAG- 199
Query: 211 FFLGGKGTCQGDSGGAAV---QNG--TVMGIVSFGRGCGQPLSPSVFAATYSPANW 261
+ GG +CQGDSGG ++G + G++S+G GC Q P ++ +W
Sbjct: 200 YLEGGIDSCQGDSGGPFACRREDGAFVLAGVISWGDGCAQKKQPGIYTMVAPYLSW 255
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 51.2 bits (117), Expect = 8e-07
Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 34/224 (15%)
Query: 42 RIVGGHETTIEDHPYQVSFIVN-----NSYFCGGIILSQDWIMTAAHCAQNVDPTT-VVL 95
RI+GG+ +I+D ++ +V+ CG ++ W++TAAHCA + + V +
Sbjct: 37 RIIGGN--SIDDGANWMAKLVSYGDNGQGILCGATVIDDFWLVTAAHCALQLQTRSFVYV 94
Query: 96 RAGSTFRKNGTIIPIALVASHPEYDDPAFDKDVAVMKTVKPM-EFGETMQPVALPALGAK 154
R R+ + A + H Y++ D D+A+++ + + G ++PV L +K
Sbjct: 95 REPKNNRERSFSVKEAYI--HSGYNNQTADNDIALLRISSDLSKLG--IKPVCLVHDDSK 150
Query: 155 -LEPNSEIVVSGWGRTV----QGAPTI--PDRLMNVTLDVVSHFKCNLSY-YLYL----- 201
L+ VV G+G T+ G P + L + ++ ++S C ++ +L L
Sbjct: 151 LLKQYKNGVVIGYGLTLGEDSSGEPKLINSQTLQSTSVPIISDDDCVKTWRFLSLLSVKI 210
Query: 202 TDNMWCAGNFFLGGKGTCQGDSGGAAV---QNG--TVMGIVSFG 240
T CAG + GT GDSGG + NG +GI S+G
Sbjct: 211 TGYQICAGAYL---HGTAPGDSGGPLLIHKSNGEYVQIGITSYG 251
>Z92832-5|CAB07374.2| 292|Caenorhabditis elegans Hypothetical
protein F31D4.6 protein.
Length = 292
Score = 38.3 bits (85), Expect = 0.006
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 16/128 (12%)
Query: 127 DVAVMKTVKPMEFGETMQPVALPALGAKLEPNSEIVVSGWGRTV-QGAPTIPDRLMNVTL 185
D A+++ K + F E ++P+ LP + + V GWGR + P I + M +
Sbjct: 144 DWAIVEVEKRIHFSENVRPICLPR--PNMYYTKSLAVPGWGRIFNESGPLIHEIPMRIDR 201
Query: 186 DVVSHFKCNLSYYLYLTDNMWCAGNFFLGGKG---TCQGDSGGAA------VQNGTVMGI 236
D + L D+ CA + + TC GDSGG ++ I
Sbjct: 202 DCKRPWSDRLPAD---ADDFICATSMNVSNYSAPRTCHGDSGGGLEYRDDNYGRAFLIAI 258
Query: 237 VSFG-RGC 243
SFG RGC
Sbjct: 259 TSFGTRGC 266
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 48 ETTIEDHPYQVSFIVNNSYFCGGIILSQDWIMTAAH 83
E+ I++ P+ VSF V+ GG I+S I+TAAH
Sbjct: 22 ESKIKNFPWAVSFTVDGVNRLGGSIISPYHIITAAH 57
>X58982-1|CAA41731.1| 498|Caenorhabditis elegans degenerin protein.
Length = 498
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 238 SFGRGCGQPLSPSVFAATYSPANW 261
SF C QP S+++ TYSPA W
Sbjct: 365 SFRCRCQQPCRQSIYSVTYSPAKW 388
>U58726-8|AAB00580.3| 768|Caenorhabditis elegans Mechanosensory
abnormality protein4 protein.
Length = 768
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 238 SFGRGCGQPLSPSVFAATYSPANW 261
SF C QP S+++ TYSPA W
Sbjct: 635 SFRCRCQQPCRQSIYSVTYSPAKW 658
>U53669-1|AAC47265.1| 768|Caenorhabditis elegans MEC-4 protein.
Length = 768
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 238 SFGRGCGQPLSPSVFAATYSPANW 261
SF C QP S+++ TYSPA W
Sbjct: 635 SFRCRCQQPCRQSIYSVTYSPAKW 658
>Z81581-2|CAD56595.1| 672|Caenorhabditis elegans Hypothetical
protein F08A10.1c protein.
Length = 672
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 196 SYYLYLTDNMWCAGNFFLGGKGTCQGDSGG--AAVQNGTVMGIVSFGRGCGQPLSPSVFA 253
SY+++ N AG F GG + + G NGT + S G G +SPS A
Sbjct: 59 SYHMFERPNRLRAGKFSYGGLTSNHPHNQGHIQLTANGTPVFAYSGGGGGSCAVSPSSSA 118
Query: 254 ATYSPANW 261
P+ W
Sbjct: 119 RREDPSKW 126
>Z81581-1|CAD56594.1| 655|Caenorhabditis elegans Hypothetical
protein F08A10.1b protein.
Length = 655
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 196 SYYLYLTDNMWCAGNFFLGGKGTCQGDSGG--AAVQNGTVMGIVSFGRGCGQPLSPSVFA 253
SY+++ N AG F GG + + G NGT + S G G +SPS A
Sbjct: 59 SYHMFERPNRLRAGKFSYGGLTSNHPHNQGHIQLTANGTPVFAYSGGGGGSCAVSPSSSA 118
Query: 254 ATYSPANW 261
P+ W
Sbjct: 119 RREDPSKW 126
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.135 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,592,223
Number of Sequences: 27539
Number of extensions: 276906
Number of successful extensions: 586
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 570
Number of HSP's gapped (non-prelim): 10
length of query: 272
length of database: 12,573,161
effective HSP length: 80
effective length of query: 192
effective length of database: 10,370,041
effective search space: 1991047872
effective search space used: 1991047872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
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