GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000841-TA|BGIBMGA000841-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR001314|Peptidase S1A, chymotrypsin,
IPR009003|Peptidase, trypsin-like serine and cysteine
         (272 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    91   7e-21
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   8.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   8.9  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 91.5 bits (217), Expect = 7e-21
 Identities = 71/224 (31%), Positives = 106/224 (47%), Gaps = 24/224 (10%)

Query: 41  SRIVGGHETTIEDHPYQVSF--IVNNSYFCGGIILSQDWIMTAAHCAQNVDPTTVVLRAG 98
           SRIVGG  T I + P              CG  I+S+ +++TAAHC  + + T + +  G
Sbjct: 159 SRIVGGTNTGINEFPMMAGIKRTYEPGMICGATIISKRYVLTAAHCIIDENTTKLAIVVG 218

Query: 99  -----STFRKNGTII-PIALVASHPEYD----DPAFDKDVAVMKTVKPMEFGETMQPVAL 148
                S    N T++  I  V  HP+YD    D     D+A++KT K ++FG+ + P  L
Sbjct: 219 EHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACL 278

Query: 149 PALG-AKLEPNSEIVVSGWGRTVQGAPTIPDRLMNVTLDVVSHFKCNLSYYLYLTDNMWC 207
           P          S++ V GWG T      +   L   TL++++  +C   YY  +  N  C
Sbjct: 279 PFQHFLDSFAGSDVTVLGWGHTSFNG-MLSHILQKTTLNMLTQVEC-YKYYGNIMVNAMC 336

Query: 208 AGNFFLGGKGTCQGDSGGAAV-QNGTV-----MGIVSFGRGCGQ 245
           A   +  GK  CQ DSGG  + QN        +GI+S+G  CG+
Sbjct: 337 A---YAKGKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAECGK 377


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 174 PTIPDRLMNVTLDVVSHFKCNLSYYLYLT 202
           P  P R+   T+DV++     ++Y+++LT
Sbjct: 452 PPHPIRVAK-TIDVIARITFPVAYFMFLT 479


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 174 PTIPDRLMNVTLDVVSHFKCNLSYYLYLT 202
           P  P R+   T+DV++     ++Y+++LT
Sbjct: 438 PPHPIRVAK-TIDVIARITFPVAYFMFLT 465


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 174 PTIPDRLMNVTLDVVSHFKCNLSYYLYLT 202
           P  P R+   T+DV++     ++Y+++LT
Sbjct: 472 PPHPIRVAK-TIDVIARITFPVAYFMFLT 499


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 174 PTIPDRLMNVTLDVVSHFKCNLSYYLYLT 202
           P  P R+   T+DV++     ++Y+++LT
Sbjct: 421 PPHPIRVAK-TIDVIARITFPVAYFMFLT 448


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,857
Number of Sequences: 429
Number of extensions: 2859
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 5
length of query: 272
length of database: 140,377
effective HSP length: 57
effective length of query: 215
effective length of database: 115,924
effective search space: 24923660
effective search space used: 24923660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)