GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000841-TA|BGIBMGA000841-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR001314|Peptidase S1A, chymotrypsin,
IPR009003|Peptidase, trypsin-like serine and cysteine
         (272 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19290.1 68416.m02446 ABA-responsive element-binding protein ...    29   3.3  
At1g26950.1 68414.m03286 hypothetical protein                          28   7.7  

>At3g19290.1 68416.m02446 ABA-responsive element-binding protein 2
           (AREB2) almost identical (one amino acid) to GB:AAF27182
           from (Arabidopsis thaliana); contains Pfam profile
           PF00170:bZIP transcription factor; identical to cDNA
           abscisic acid responsive elements-binding factor (ABRE)
           mRNA, partial cds GI:6739282
          Length = 431

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 130 VMKTVKPMEFGETMQPVALPALGAKLEPNSEIVVSGWGRTVQGAPTIPDRLMNVTLDVVS 189
           ++K++   E  + M   + PA  A  +P + I   G     QG+ T+P  +   T+D V 
Sbjct: 67  LLKSIWTAEEAQAMAMTSAPAATAVAQPGAGIPPPGGNLQRQGSLTLPRTISQKTVDEV- 125

Query: 190 HFKC 193
            +KC
Sbjct: 126 -WKC 128


>At1g26950.1 68414.m03286 hypothetical protein
          Length = 158

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 40  DSRIVGGHETTIEDHPYQVSFIVNNSYFCGGIILSQDWIMTAAH 83
           DS++V G  TT  +  + +SF+V     C G   S+DWI+  +H
Sbjct: 67  DSKLVAGFLTTGIEDSHLLSFLVR---LCYG-FSSKDWIVRVSH 106


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.135    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,378,212
Number of Sequences: 28952
Number of extensions: 266657
Number of successful extensions: 456
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 2
length of query: 272
length of database: 12,070,560
effective HSP length: 80
effective length of query: 192
effective length of database: 9,754,400
effective search space: 1872844800
effective search space used: 1872844800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)