Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000840-TA|BGIBMGA000840-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR001314|Peptidase S1A, chymotrypsin,
IPR009003|Peptidase, trypsin-like serine and cysteine
         (273 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    29   0.54 
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    28   1.3  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    28   1.7  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   6.7  

>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 89  QNVDPSTVVLRGGSS-WRKNGTIIPIEKVIAHPEYDNPAFDKDVAVMKT 136
           +++D ST++  G S+ W++NG        ++ P     A D DV +M T
Sbjct: 240 RSLDHSTIIYEGDSTFWKRNGDYTNASPPVSAPLLRLSACDSDVNLMAT 288


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 21/89 (23%), Positives = 38/89 (42%)

Query: 96  VVLRGGSSWRKNGTIIPIEKVIAHPEYDNPAFDKDVAVMKTKEPIQFSDTMQPIGLPSMD 155
           VVL  G      G    + K++++ E  +    KD+++   K  +  S TM+       D
Sbjct: 298 VVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSD 357

Query: 156 RAMRGGTEVSVSGWGRTKQGAASIPERLM 184
            A++    +  S    T  G +  PE+L+
Sbjct: 358 SALKDALYLKSSIVEETNDGYSQAPEQLL 386


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 90  NVDPSTVVLRGGSSWR-KNGTIIPIEKVIAHPEYDNPAFDKDVAVMKTKEPIQFSDTMQP 148
           NVDP+   L   S W+ +   +  +  V++ P+  +  F   VA++ TK   + ++ M  
Sbjct: 286 NVDPNLETLMASSKWKDRKEALDKLLPVLSQPKIKDNDFFNLVAIL-TKSVSKDANIMVV 344

Query: 149 IGLPSMDRAMRGGTEVSVSGWGRTKQGA 176
           I      +AM  G   + S +  T   A
Sbjct: 345 INAAHCIQAMAKGLRSNFSKYASTSINA 372


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 10  FFGLTL-LYSQLAYGLDFSNFP--TLEEFLKEPMVNDDRI 46
           F G+   LY   A+GL F N+P   L  FL+  M  + R+
Sbjct: 546 FLGIVASLYYCFAHGLQFINWPRLLLPSFLRSDMTPEGRV 585


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.138    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,270,840
Number of Sequences: 5004
Number of extensions: 52561
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 4
length of query: 273
length of database: 2,362,478
effective HSP length: 72
effective length of query: 201
effective length of database: 2,002,190
effective search space: 402440190
effective search space used: 402440190
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)