Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000840-TA|BGIBMGA000840-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR001314|Peptidase S1A, chymotrypsin,
IPR009003|Peptidase, trypsin-like serine and cysteine
         (273 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    85   8e-19
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    25   0.96 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.0  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   9.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.0  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 84.6 bits (200), Expect = 8e-19
 Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 22/225 (9%)

Query: 42  NDDRIVGGQEAFIDDYPHQVSFVVNNTY----FCGGSIISENWILTAAHC--SQNVDPST 95
           N  RIVGG    I+++P      +  TY     CG +IIS+ ++LTAAHC   +N     
Sbjct: 157 NPSRIVGGTNTGINEFPMMAG--IKRTYEPGMICGATIISKRYVLTAAHCIIDENTTKLA 214

Query: 96  VVLRGGSSW----RKNGTII-PIEKVIAHPEYDNPAFD----KDVAVMKTKEPIQFSDTM 146
           +V+ G   W      N T++  I KVI HP+YD    D     D+A++KT++ I+F D +
Sbjct: 215 IVV-GEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKV 273

Query: 147 QPIGLPSMD-RAMRGGTEVSVSGWGRTKQGAASIPERLMDVRIPVVSYPECFLSYFSVLT 205
            P  LP         G++V+V GWG T      +   L    + +++  EC+  Y +++ 
Sbjct: 274 GPACLPFQHFLDSFAGSDVTVLGWGHTSFN-GMLSHILQKTTLNMLTQVECYKYYGNIMV 332

Query: 206 RNM--WCGGNFFLXXXXXXXXXXXXXAVQDGMAVGIVSFGRGCGQ 248
             M  +  G                   +  + +GI+S+G  CG+
Sbjct: 333 NAMCAYAKGKDACQMDSGGPVLWQNPRTKRLVNIGIISWGAECGK 377


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)

Query: 80  WILTAAHCSQ---NVDPSTVVLRGGSSWRKNGT 109
           W LT   C +   N+DPS   L   ++W+K+ T
Sbjct: 371 WRLTCRKCFKSRTNLDPSNRKLPAPANWKKDTT 403


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 101 GSSWRK-NGTIIPIEKVIAHPEYDNPAFDKDVAVMKTKEP 139
           GS + K N    PI   I+HP+Y    F K  ++    EP
Sbjct: 316 GSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLACAAEP 355


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 4/25 (16%)

Query: 190 VVSYPECFLSYFSVLTRNMWCGGNF 214
           V SY EC +  F+V+  N    GNF
Sbjct: 59  VQSYVECMMKKFNVVDEN----GNF 79


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 111  IPIEKVIAHPEYDNPAFDKDVAVMKTKEPIQF--SDTMQP 148
            IP +K ++    +N A  K+V V+   + I+F    T QP
Sbjct: 1488 IPKDKSVSVLSRENEAGQKEVKVLLGSDKIKFVPGTTSQP 1527


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,514
Number of Sequences: 429
Number of extensions: 2950
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 5
length of query: 273
length of database: 140,377
effective HSP length: 57
effective length of query: 216
effective length of database: 115,924
effective search space: 25039584
effective search space used: 25039584
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)