GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000840-TA|BGIBMGA000840-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR001314|Peptidase S1A, chymotrypsin,
IPR009003|Peptidase, trypsin-like serine and cysteine
         (273 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0321 + 2328932-2328963,2329084-2329243,2329388-2329576,233...    32   0.57 
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965...    29   5.3  
01_05_0666 + 24132641-24132768,24134854-24134860,24135042-241352...    29   5.3  
01_06_0060 + 26068792-26069363,26069525-26070209                       28   7.0  

>06_01_0321 +
           2328932-2328963,2329084-2329243,2329388-2329576,
           2330406-2330517,2331395-2331474,2332022-2332132,
           2332580-2332666,2332979-2333260,2333804-2333965
          Length = 404

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 73  GSIISENWILTAAHCSQNVDPSTVVLRGGSSWRKNGTII 111
           G+I+S++WIL +    + VD    ++  G  WRKN  ++
Sbjct: 122 GTIVSKDWILESHSQRKLVDIEPYLMHVGKPWRKNKELV 160


>03_02_0584 -
           9650996-9651488,9651630-9652049,9652129-9652158,
           9652201-9652287,9652657-9653669,9653832-9654854,
           9654946-9654969
          Length = 1029

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 7/57 (12%)

Query: 114 EKVIAH---PEYDNPAFDKDVAVMKTKEPIQFSDTMQPIGLPSMDRAMRGGTEVSVS 167
           E+V +H   P  D PA    V V   K P+  SD + P G+P   R     T ++VS
Sbjct: 7   EEVCSHRLGPRLDEPA----VGVPIKKRPVLLSDRLLPSGMPPSMRPSSPATGMAVS 59


>01_05_0666 +
           24132641-24132768,24134854-24134860,24135042-24135230,
           24136017-24136185,24136299-24136744,24137540-24137563,
           24137736-24137828,24138806-24138884,24138979-24139063,
           24139479-24139788,24140471-24140614
          Length = 557

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 113 IEKVIAHPEYDNPAFDKDVAVMKTK 137
           I K I HP YD+P   K  A+ KTK
Sbjct: 364 IAKPINHPTYDDPNNGKAYAIFKTK 388


>01_06_0060 + 26068792-26069363,26069525-26070209
          Length = 418

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 6/118 (5%)

Query: 84  AAHCSQNVDPSTVVLRGGSSWRKNGTIIPIEKVIAHPEYDNPAFDKDVAVMKTKEPIQFS 143
           +AH ++ + PS +  RG SSWR+ G      K++A P   +  F    A +    P+ F 
Sbjct: 153 SAHAARRLPPSPLGPRGTSSWRRFGL-----KLVADPP-GSSQFRFLFAELVNNTPLLFE 206

Query: 144 DTMQPIGLPSMDRAMRGGTEVSVSGWGRTKQGAASIPERLMDVRIPVVSYPECFLSYF 201
              +     S +     G   +    G     A + P+ +M    P V  P  F   F
Sbjct: 207 YQSETDTWQSSEAVQAEGASTAAGTEGTFLCAAHAGPDCVMVYSGPGVERPVFFRPRF 264


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.138    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,420,254
Number of Sequences: 37544
Number of extensions: 360636
Number of successful extensions: 590
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 4
length of query: 273
length of database: 14,793,348
effective HSP length: 81
effective length of query: 192
effective length of database: 11,752,284
effective search space: 2256438528
effective search space used: 2256438528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)