GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000840-TA|BGIBMGA000840-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR001314|Peptidase S1A, chymotrypsin,
IPR009003|Peptidase, trypsin-like serine and cysteine
         (273 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    90   2e-18
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    85   7e-17
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    48   5e-06
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    38   0.006
U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical pr...    32   0.51 
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    30   2.0  
Z69634-6|CAA93456.1|  731|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 13/226 (5%)

Query: 43  DDRIVGGQEAFIDDYPHQVSFVVN-NTYFCGGSIISENWILTAAHC-SQNVDPSTVVLRG 100
           D R++GG E+    +P  V  +     + CGGS+I  N++LTAAHC +++  P++  +R 
Sbjct: 55  DHRLIGGSESSPHSWPWTVQLLSRLGHHRCGGSLIDPNFVLTAAHCFAKDRRPTSYSVRV 114

Query: 101 GSSWRKNGTIIPIEKVIAHPEYDNPAFDK--DVAVMKTKEPIQFSDTMQPIGLPSMDRAM 158
           G     +G+   +  V  HP Y N  F    D A+M+   P+  S T +PI LPS+  A+
Sbjct: 115 GGHRSGSGSPHRVTAVSIHPWY-NIGFPSSYDFAIMRIHPPVNTSTTARPICLPSLP-AV 172

Query: 159 RGGTEVSVSGWGRTKQGAASIPERLMDVRIPVVSYPEC--FLSYFS-VLTRNMWCGG-NF 214
                V V+GWG T +G++     L ++ +P++S   C    +Y   +   +M C G ++
Sbjct: 173 ENRLCV-VTGWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCAGYSY 231

Query: 215 FLXXXXXXXXXXXXXAVQDG--MAVGIVSFGRGCGQSFAPSVFANI 258
                            +DG     G+VS+G GC +   P V+ N+
Sbjct: 232 GKIDSCQGDSGGPLMCARDGHWELTGVVSWGIGCARPGMPGVYGNV 277


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 64/229 (27%), Positives = 107/229 (46%), Gaps = 18/229 (7%)

Query: 45  RIVGGQEAFIDDYPHQVSF--VVNNTYFCGGSIISENWILTAAHC---SQNVDPSTVVLR 99
           R+VGG E     +P   +        + CG SI+ +  ++TAAHC    + V    VV+ 
Sbjct: 26  RVVGGFETVPGAFPWTAALRNKATKAHHCGASILDKTHLITAAHCFEEDERVSSYEVVVG 85

Query: 100 GGSSWRKNGT--IIPIEKVIAHPEYDNPAFDKDVAVMKTKEP-IQFSDTMQPIGLPSMDR 156
              + + +G   I  ++++  +P Y +  F  D+A+++   P I+F++  QPI LPS D 
Sbjct: 86  DWDNNQTDGNEQIFYLQRIHFYPLYKD-IFSHDIAILEIPYPGIEFNEYAQPICLPSKDF 144

Query: 157 AMRGGTEVSVSGWGRTKQGAASIPERLMDVRIPVVSYPECFLS--YFSVLTRNMWCGGNF 214
               G +  VSGWG          ERL    IP+++  +C  S   +S ++R+ +C G  
Sbjct: 145 VYTPGRQCVVSGWGSM---GLRYAERLQAALIPIINRFDCVNSSQIYSSMSRSAFCAGYL 201

Query: 215 FLXXXXXXXXXXXXXAV--QDGMAV--GIVSFGRGCGQSFAPSVFANIA 259
                          A   +DG  V  G++S+G GC Q   P ++  +A
Sbjct: 202 EGGIDSCQGDSGGPFACRREDGAFVLAGVISWGDGCAQKKQPGIYTMVA 250


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 52/220 (23%), Positives = 96/220 (43%), Gaps = 26/220 (11%)

Query: 45  RIVGGQEAFIDDYPHQVSFVVN-----NTYFCGGSIISENWILTAAHCSQNVDP-STVVL 98
           RI+GG    IDD  + ++ +V+         CG ++I + W++TAAHC+  +   S V +
Sbjct: 37  RIIGGNS--IDDGANWMAKLVSYGDNGQGILCGATVIDDFWLVTAAHCALQLQTRSFVYV 94

Query: 99  RGGSSWRKNGTIIPIEKVIAHPEYDNPAFDKDVAVMKTKEPIQFSDTMQPIGLPSMD-RA 157
           R   + R+      +++   H  Y+N   D D+A+++    +     ++P+ L   D + 
Sbjct: 95  REPKNNRERS--FSVKEAYIHSGYNNQTADNDIALLRISSDLS-KLGIKPVCLVHDDSKL 151

Query: 158 MRGGTEVSVSGWGRT----KQGAASI--PERLMDVRIPVVSYPEC-----FLSYFSV-LT 205
           ++      V G+G T      G   +   + L    +P++S  +C     FLS  SV +T
Sbjct: 152 LKQYKNGVVIGYGLTLGEDSSGEPKLINSQTLQSTSVPIISDDDCVKTWRFLSLLSVKIT 211

Query: 206 RNMWCGGNFFLXXXXXXXXXXXXXAVQDG--MAVGIVSFG 243
               C G +                  +G  + +GI S+G
Sbjct: 212 GYQICAGAYLHGTAPGDSGGPLLIHKSNGEYVQIGITSYG 251


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 24/62 (38%), Positives = 32/62 (51%)

Query: 50  QEAFIDDYPHQVSFVVNNTYFCGGSIISENWILTAAHCSQNVDPSTVVLRGGSSWRKNGT 109
           QE+ I ++P  VSF V+     GGSIIS   I+TAAH       S   L    +W+K  +
Sbjct: 21  QESKIKNFPWAVSFTVDGVNRLGGSIISPYHIITAAHGFITTIGSRGNLCENKNWKKPNS 80

Query: 110 II 111
            I
Sbjct: 81  SI 82



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 130 DVAVMKTKEPIQFSDTMQPIGLPSMDRAMRGGTEVSVSGWGR 171
           D A+++ ++ I FS+ ++PI LP  +  M     ++V GWGR
Sbjct: 144 DWAIVEVEKRIHFSENVRPICLPRPN--MYYTKSLAVPGWGR 183


>U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical
           protein B0286.6 protein.
          Length = 279

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 123 DNPAFDKDVAVMKTKEPIQFSDTMQPIGLPSMDRAMR-GGTEVSVSGWGR 171
           D  +F+ D+AV + +EPI+FS  + P  LPS  +  R   T   + G+GR
Sbjct: 116 DRESFN-DIAVFELEEPIEFSKDIFPACLPSAPKIPRIRETGYKLFGYGR 164


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
          protease protein 5 protein.
          Length = 331

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 71 CGGSIISENWILTAAHCSQ 89
          CGG++I+   +LTAAHC Q
Sbjct: 62 CGGTLITLKHVLTAAHCFQ 80


>Z69634-6|CAA93456.1|  731|Caenorhabditis elegans Hypothetical
           protein B0001.7 protein.
          Length = 731

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 14/89 (15%)

Query: 14  TLLYSQLAYGLDFSNFPTLEEFLKEPMVNDD--------RIVGGQ--EAFIDDYPHQVSF 63
           T+LYS++   L  + +  +  F ++P +  +        R++G      +++D    VSF
Sbjct: 134 TVLYSEVVVPL-VNPYSNMSYFERDPHLTAELYMIPGFGRVLGSSAYRQYLEDNRDNVSF 192

Query: 64  VVNNTYFCGGSIISENWILTAAHCSQNVD 92
           +V    +CGGS+   +WI++        D
Sbjct: 193 IVQ---YCGGSLRGCSWIMSVVDGKAQTD 218


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.138    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,914,263
Number of Sequences: 27539
Number of extensions: 289442
Number of successful extensions: 529
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 516
Number of HSP's gapped (non-prelim): 8
length of query: 273
length of database: 12,573,161
effective HSP length: 80
effective length of query: 193
effective length of database: 10,370,041
effective search space: 2001417913
effective search space used: 2001417913
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)