GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000840-TA|BGIBMGA000840-PA|IPR001254|Peptidase S1 and
S6, chymotrypsin/Hap, IPR001314|Peptidase S1A, chymotrypsin,
IPR009003|Peptidase, trypsin-like serine and cysteine
         (273 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80420.2 68414.m09416 DNA repair protein, putative (XRCC1) id...    31   1.1  
At1g80420.1 68414.m09415 DNA repair protein, putative (XRCC1) id...    31   1.1  
At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD) i...    29   3.4  
At2g42320.1 68415.m05238 nucleolar protein gar2-related contains...    29   4.4  

>At1g80420.2 68414.m09416 DNA repair protein, putative (XRCC1)
           identical to putative DNA repair protein XRCC1
           [Arabidopsis thaliana] GI:11181954; contains Pfam
           domain, PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 353

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 72  GGSIISENWILTAAHCSQNVDPSTVVLRGGSSWRKNGT 109
           GG+IIS+ WI       + VD    ++  G  WRK+ +
Sbjct: 120 GGTIISKEWITECYAQKKLVDIEQYLMHAGKPWRKSSS 157


>At1g80420.1 68414.m09415 DNA repair protein, putative (XRCC1)
           identical to putative DNA repair protein XRCC1
           [Arabidopsis thaliana] GI:11181954; contains Pfam
           domain, PF00533: BRCA1 C Terminus (BRCT) domain
          Length = 353

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 72  GGSIISENWILTAAHCSQNVDPSTVVLRGGSSWRKNGT 109
           GG+IIS+ WI       + VD    ++  G  WRK+ +
Sbjct: 120 GGTIISKEWITECYAQKKLVDIEQYLMHAGKPWRKSSS 157


>At4g02560.1 68417.m00350 homeobox protein LUMINIDEPENDENS (LD)
           identical to Homeobox protein LUMINIDEPENDENS
           (Swiss-Prot:Q38796) [Arabidopsis thaliana]
          Length = 953

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 120 PEYDNPAFDKDVAVMKTKEPIQFSDTMQPIGLPSMDRAMRG 160
           P  +N A  +D  V+ T +P+    T+QP+  PS  + + G
Sbjct: 480 PIQNNEAKTEDTPVLSTVQPVNGFSTIQPVNGPSAVQPVNG 520


>At2g42320.1 68415.m05238 nucleolar protein gar2-related contains
           weak similarity to Swiss-Prot:P41891 protein gar2
           [Schizosaccharomyces pombe]
          Length = 669

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 78  ENWILTAAHCSQNVDPSTVVLRGGSSWRKNGTIIPIEKVIAHPEYDNPAFDKD 130
           +N ++ +A   Q  D S+VV +       +G+I  +EK +   E  +   DKD
Sbjct: 79  DNGVIASADAHQESDSSSVVDKTEKEHNLSGSICDLEKDVDEQECKDANIDKD 131


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.138    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,643,681
Number of Sequences: 28952
Number of extensions: 278811
Number of successful extensions: 500
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 496
Number of HSP's gapped (non-prelim): 4
length of query: 273
length of database: 12,070,560
effective HSP length: 80
effective length of query: 193
effective length of database: 9,754,400
effective search space: 1882599200
effective search space used: 1882599200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)