GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000839-TA|BGIBMGA000839-PA|IPR001680|WD-40 repeat,
IPR002086|Aldehyde dehydrogenase, IPR011047|Quinonprotein alcohol
dehydrogenase-like, IPR006789|ARP2/3 complex 16 kDa subunit (p16-Arc),
IPR007190|Periodic tryptophan protein-associated region
         (746 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    27   0.47 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    27   0.47 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    27   0.47 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    27   0.47 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           27   0.47 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    27   0.47 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   1.4  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    25   1.4  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   1.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   2.5  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    24   3.3  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    23   7.6  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    23   7.6  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 0.47
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 143 SDRDAEQEQNNSKVNSEENDKRLMYKKLGRHYIGDAIRNADRKVKLTAVQYHKENKLLVT 202
           S   A    NNSK +S+ ++   +Y  + R ++G +  NA+ + K     Y +   L + 
Sbjct: 178 STEKAGTNNNNSK-SSQSSNPPQIYPWMKRVHLGQSTVNANGETKRQRTSYTRYQTLELE 236

Query: 203 GFSSGLFFLHEMPDVNLIHTLSISEHRI 230
                  +L     + + H L ++E +I
Sbjct: 237 KEFHFNRYLTRRRRIEIAHALCLTERQI 264


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 0.47
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 143 SDRDAEQEQNNSKVNSEENDKRLMYKKLGRHYIGDAIRNADRKVKLTAVQYHKENKLLVT 202
           S   A    NNSK     N  ++ Y  + R ++G +  NA+ + K     Y +   L + 
Sbjct: 178 STEKAGTNNNNSKSGQSSNPPQI-YPWMKRVHLGQSTVNANGETKRQRTSYTRYQTLELE 236

Query: 203 GFSSGLFFLHEMPDVNLIHTLSISEHRI 230
                  +L     + + H L ++E +I
Sbjct: 237 KEFHFNRYLTRRRRIEIAHALCLTERQI 264


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 0.47
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 143 SDRDAEQEQNNSKVNSEENDKRLMYKKLGRHYIGDAIRNADRKVKLTAVQYHKENKLLVT 202
           S   A    NNSK     N  ++ Y  + R ++G +  NA+ + K     Y +   L + 
Sbjct: 178 STEKAGTNNNNSKSGQSSNPPQI-YPWMKRVHLGQSTVNANGETKRQRTSYTRYQTLELE 236

Query: 203 GFSSGLFFLHEMPDVNLIHTLSISEHRI 230
                  +L     + + H L ++E +I
Sbjct: 237 KEFHFNRYLTRRRRIEIAHALCLTERQI 264


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 27.1 bits (57), Expect = 0.47
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 143 SDRDAEQEQNNSKVNSEENDKRLMYKKLGRHYIGDAIRNADRKVKLTAVQYHKENKLLVT 202
           S   A    NNSK     N  ++ Y  + R ++G +  NA+ + K     Y +   L + 
Sbjct: 134 STEKAGTNNNNSKSGQSSNPPQI-YPWMKRVHLGQSTVNANGETKRQRTSYTRYQTLELE 192

Query: 203 GFSSGLFFLHEMPDVNLIHTLSISEHRI 230
                  +L     + + H L ++E +I
Sbjct: 193 KEFHFNRYLTRRRRIEIAHALCLTERQI 220


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 0.47
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 143 SDRDAEQEQNNSKVNSEENDKRLMYKKLGRHYIGDAIRNADRKVKLTAVQYHKENKLLVT 202
           S   A    NNSK     N  ++ Y  + R ++G +  NA+ + K     Y +   L + 
Sbjct: 178 STEKAGTNNNNSKSGQSSNPPQI-YPWMKRVHLGQSTVNANGETKRQRTSYTRYQTLELE 236

Query: 203 GFSSGLFFLHEMPDVNLIHTLSISEHRI 230
                  +L     + + H L ++E +I
Sbjct: 237 KEFHFNRYLTRRRRIEIAHALCLTERQI 264


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 0.47
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 143 SDRDAEQEQNNSKVNSEENDKRLMYKKLGRHYIGDAIRNADRKVKLTAVQYHKENKLLVT 202
           S   A    NNSK     N  ++ Y  + R ++G +  NA+ + K     Y +   L + 
Sbjct: 178 STEKAGTNNNNSKSGQSSNPPQI-YPWMKRVHLGQSTVNANGETKRQRTSYTRYQTLELE 236

Query: 203 GFSSGLFFLHEMPDVNLIHTLSISEHRI 230
                  +L     + + H L ++E +I
Sbjct: 237 KEFHFNRYLTRRRRIEIAHALCLTERQI 264


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 109 DDTSRKKRVRL-QNEGNLEEEFDAKDDIEKEKEYDSDRDAEQEQNNSKVNSEENDKR 164
           DD      V++ ++EG+ E+E  + +++ +EK    D    +E++    +S +N  R
Sbjct: 10  DDLGSTDEVKVFKDEGDGEDEKRSSENLTEEKSSLIDLTESEEKSGGSYSSNKNVSR 66


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 116 RVRLQNEGNLEEEFDAKDDIEKEKEYDSDRDAEQEQNNSKVNSEENDKRLMYKKLGRHYI 175
           R RL+ E  +  E   K D + +    SD D  ++    K +  +   R+  ++ G+   
Sbjct: 139 RRRLKKENKMTWEPKNKTD-DDDDALVSDSDDREKDEEDKRDDTDMHGRIKSERNGKDLD 197

Query: 176 GDAIRNADRKVKLTAVQYH 194
            D + + DRK  L     H
Sbjct: 198 DDDMNDDDRKDDLLGNNMH 216



 Score = 24.2 bits (50), Expect = 3.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 107 KQDDTSRKKRVRLQNEGNLEEEFDAKDDIEKE 138
           K+DDT    R++ +  G   ++ D  DD  K+
Sbjct: 177 KRDDTDMHGRIKSERNGKDLDDDDMNDDDRKD 208


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 453 DGEEIAVSTLD---GNITFFEPSTCEQTGSVE-GRSDLGSGRAETDLVTPQTLLKTKAFT 508
           D +++ +  +D   G+++  E +   +T +      D   GR E ++    T L   A  
Sbjct: 484 DNQQLELKPIDLNSGDLSMLETNNLSETFTQNLSLMDESEGRQEPNMTDSLTRLANSALD 543

Query: 509 TICYSAD 515
            IC ++D
Sbjct: 544 NICQASD 550


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 15/59 (25%), Positives = 35/59 (59%), Gaps = 4/59 (6%)

Query: 100 DAD-ELAVKQDDTSRKKRVRLQNEGNLEEEFDAKDDIEKEKEYDSDRDAEQEQNNSKVN 157
           +AD E+ VK++    +   RL+N  +++ + +A+D  E E+ + S+   E++++   V+
Sbjct: 859 EADGEVVVKKEVDEEE---RLENHTSVKIKREAEDRDEDERSFHSNGAKEEDEDKPSVS 914


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 143 SDRDAEQEQNNSKVNSEENDKRLMYKKLGRHYIGDAIRNADRKVKLTAVQYHKENKLLVT 202
           S   A    NNSK     N  ++ Y  + R ++G +  NA+ + K     Y +   L + 
Sbjct: 178 STEKAGTNNNNSKSGQSSNPPQI-YPWMKRVHLGQSTVNANGETKRQRTSYTRYQTLELE 236

Query: 203 GFSSGLFFLHEMPDVNLIHTLSISEHRISS 232
                  +L     + + H L ++   + S
Sbjct: 237 KEFHFNRYLTRRRRIEIAHALCLTNKNLVS 266


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 23.0 bits (47), Expect = 7.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 144 DRDAEQEQNNSKVNSEENDKRLMYKKLGR 172
           D D++ +  N KVN     +++M + LGR
Sbjct: 387 DFDSKLQTMNIKVNYHRVHRKIMVQSLGR 415


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 23.0 bits (47), Expect = 7.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 144 DRDAEQEQNNSKVNSEENDKRLMYKKLGR 172
           D D++ +  N KVN     +++M + LGR
Sbjct: 112 DFDSKLQTMNIKVNYHRVHRKIMVQSLGR 140


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.133    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,433
Number of Sequences: 317
Number of extensions: 7377
Number of successful extensions: 36
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 16
length of query: 746
length of database: 114,650
effective HSP length: 62
effective length of query: 684
effective length of database: 94,996
effective search space: 64977264
effective search space used: 64977264
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)