Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000838-TA|BGIBMGA000838-PA|IPR001766|Fork head
transcription factor
         (218 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    80   1e-17
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    79   3e-17
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.3  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 80.2 bits (189), Expect = 1e-17
 Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 4/77 (5%)

Query: 66  KPPYTYPELIERALRENGE--LTVSGIYQWISDRFPFYKANDERWKNSVRHNLSINPHFR 123
           KPPY+Y  LI  A++ + +  LT+S IYQ+I D FPFY+ N +RW+NS+RH+LS N  F 
Sbjct: 140 KPPYSYISLITMAIQNSPQKMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFV 199

Query: 124 KGARAPQ--GAGHLWSL 138
           K  R P   G G  WSL
Sbjct: 200 KVPRTPDKPGKGSFWSL 216


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 79.0 bits (186), Expect = 3e-17
 Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 5/149 (3%)

Query: 56  KVDVESPAVRKPPYTYPELIERALRENGE--LTVSGIYQWISDRFPFYKANDERWKNSVR 113
           K   E  +  KPPY+Y  LI  A+R + E  LT++GIY++I   FP+Y+ N + W+NS+R
Sbjct: 73  KESEEKKSKEKPPYSYNALIMMAIRNSPEKRLTLNGIYEYIMRNFPYYRENKQGWQNSIR 132

Query: 114 HNLSINPHFRKGAR--APQGAGHLWSLAANAIDLLPLRNTPMPEEKAAEPLHTAKIIGFP 171
           HNLS+N  F K  R     G G+ W L  +A D+  +  T     + +     +++  F 
Sbjct: 133 HNLSLNKCFVKVPRHYDDPGKGNYWMLDPSAEDVF-IGGTTGKLRRRSTAASRSRLAAFK 191

Query: 172 KVIVLDEAAIAAASIIPDQDLFSGSTMFL 200
           + I L           P    + G++  L
Sbjct: 192 RTIALGAFYQPLQPFPPPYPFYPGTSAML 220


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 69  YTYPELIERALRENGELTVSGIYQWISDRFPFYKANDERW 108
           Y   E +E+ +    E+ + G++ W +D   F      +W
Sbjct: 489 YDDSESVEKKVNYVQEMNLGGVFIWATDLDDFKGVCGMKW 528


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,563
Number of Sequences: 317
Number of extensions: 2282
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 218
length of database: 114,650
effective HSP length: 54
effective length of query: 164
effective length of database: 97,532
effective search space: 15995248
effective search space used: 15995248
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)