GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000838-TA|BGIBMGA000838-PA|IPR001766|Fork head
transcription factor
         (218 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    80   2e-16
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    74   1e-14
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    69   5e-13
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    61   1e-10
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.2  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    27   2.8  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    26   3.7  

>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 80.2 bits (189), Expect = 2e-16
 Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 7/116 (6%)

Query: 65  RKPPYTYPELIERALRENGE--LTVSGIYQWISDRFPFYKANDERWKNSVRHNLSINPHF 122
           +KPPY+Y  +I +A+  + E  +T+S IY WIS  +P+Y+     W+NS+RHNLS+N  F
Sbjct: 222 KKPPYSYSVMIAQAILSSSECMMTLSNIYSWISTHYPYYRTTKSGWQNSIRHNLSLNKAF 281

Query: 123 RKGAR--APQGAGHLWSLAANAID--LLPLRNTPMPEEKAAE-PLHTAKIIGFPKV 173
           RK  R    QG G  WS+     +  +   R TP     ++  PL   K  G P +
Sbjct: 282 RKVPRKSGEQGKGMKWSIVPEFREEFIAKTRKTPRKRSPSSPVPLLAKKREGSPSL 337


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 74.1 bits (174), Expect = 1e-14
 Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 4/78 (5%)

Query: 65  RKPPYTYPELIERALRENGE--LTVSGIYQWISDRFPFYKANDERWKNSVRHNLSINPHF 122
           +KPPY+Y  LI  ++  + +  LT+S IY WIS+ F FY  ++  W+NS+RHNLS+N  F
Sbjct: 127 KKPPYSYAMLIGMSIIRSPDRRLTLSAIYDWISNTFSFYNKSNNGWQNSIRHNLSLNKAF 186

Query: 123 RKGARAPQ--GAGHLWSL 138
            K  R     G GH WS+
Sbjct: 187 MKIERPRNLPGKGHFWSI 204


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 68.9 bits (161), Expect = 5e-13
 Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 6/78 (7%)

Query: 66  KPPYTYPELIERALRE--NGELTVSGIYQWISDRFPFYKANDERWKNSVRHNLSINPHFR 123
           KPP +Y  LI  A+ +  N +LT+SGIY WI + F +Y  +D  W+NS+RHNLS+N  F 
Sbjct: 81  KPPCSYATLIGLAILQSHNKQLTLSGIYTWIRNTFRYYLNHDGGWQNSIRHNLSLNKAFI 140

Query: 124 KGARAPQG---AGHLWSL 138
           K    P+G    GH W++
Sbjct: 141 K-VEKPKGKTLKGHYWTI 157


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 7/108 (6%)

Query: 63  AVRKPPYTYPELIERAL--RENGELTVSGIYQWISDRFPFYKANDERWKNSVRHNLSINP 120
           A +KP  +Y  LI R L    N ++T+  I +WI++ + +Y+     W NS+RHNLS+N 
Sbjct: 288 ATQKPNLSYANLIARTLIANPNKKMTLGDICEWIANNWSYYRHQPPAWHNSIRHNLSLNK 347

Query: 121 HFRKGARAPQ--GAGHLWSLAANAIDLLP---LRNTPMPEEKAAEPLH 163
            F +  R     G G  W L  + ID       R T  P   A    H
Sbjct: 348 AFIRIPRRQNEPGKGSFWMLDPSYIDQFEGNFFRRTKKPTPSATPAAH 395


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 64  VRKPPYTYPELIERALRENGELTVSGIYQWISDRFPFYKANDERWKNSVRHNLS 117
           V+   +T   L+   L++N EL  S +  +  +   FY ++DE W +     LS
Sbjct: 453 VKNSAWTQLGLVHLVLQQNLELLESVMLDYAFEGIAFYGSSDEAWASGNYTTLS 506


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/58 (22%), Positives = 24/58 (41%)

Query: 69  YTYPELIERALRENGELTVSGIYQWISDRFPFYKANDERWKNSVRHNLSINPHFRKGA 126
           Y YP LI  A+R     +   I+ W++   P      +    ++R  ++     R G+
Sbjct: 356 YDYPTLIRLAIRNTLSPSKDEIFNWLAQNVPLLPTFHDSASEAIRWMVNKGQLVRSGS 413


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 13  RRKLSKNIDNDNDCASLAWLLNFRLDEVVNVRVPD 47
           ++ +S N+     C S+AWL++   D+V++  +PD
Sbjct: 183 QQMVSSNVSRPIICLSMAWLVSD--DKVIDASLPD 215


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,102,502
Number of Sequences: 5004
Number of extensions: 47211
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 7
length of query: 218
length of database: 2,362,478
effective HSP length: 70
effective length of query: 148
effective length of database: 2,012,198
effective search space: 297805304
effective search space used: 297805304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)